RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA977246", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA977246 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9879614 9879614 PRJNA977246_S_NODE_39148_length_184_cov_7.083871_g38156_i0 PRJNA977246 39148 184 7.083871 13.03432264 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 100 9.64e-23   NR MBY0528892.1 2047756 g38156 i0 84.7 0.96195652173913 59 9 96.2 0 3 179 156 214 MBY0528892.1 phosphoenolpyruvate--protein phosphotransferase [Rhabdochlamydiaceae bacterium] diamond 177 100 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
31448240 31448240 PRJNA977246_S_NODE_17736_length_336_cov_5.153094_g16744_i0 PRJNA977246 17736 336 5.153094 17.31439584 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 181 9.11e-52   NR MBY0528892.1 2047756 g16744 i0 80.2 0.991071428571429 111 22 99.1 0 336 4 16 126 MBY0528892.1 phosphoenolpyruvate--protein phosphotransferase [Rhabdochlamydiaceae bacterium] diamond 333 181 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;