RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA977246", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

analysis 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA977246 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13704996 13704996 PRJNA977246_S_NODE_33371_length_209_cov_2.233333_g32379_i0 PRJNA977246 33371 209 2.233333 4.66766597 Tetratrichomonas gallinarum 5730 Parabasalia other_Eukaryota 387 4.42e-103   NTclustered gi|37962223|gb|AY245113.1| 5730 g32379 i0 100 99.8373205741627 209 0 100 0 1 209 726 518 Tetratrichomonas gallinarum strain GPO small subunit ribosomal RNA gene, partial sequence blastn 20866 387 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Tetratrichomonas Tetratrichomonas gallinarum
30910963 30910963 PRJNA977246_S_NODE_27054_length_246_cov_3.700461_g26062_i0 PRJNA977246 27054 246 3.7004609999999998 9.10313406 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 42.4 0.014   NR KAJ4457590.1 342808 g26062 i0 54.1 0.451219512195122 37 17 45.1 0 237 127 63 99 KAJ4457590.1 putative large subunit ribosomal protein L21e [Paratrimastix pyriformis] diamond 111 42.4 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;