RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA977246", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA977246 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8603910 8603910 PRJNA977246_S_NODE_18467_length_327_cov_74.020134_g17475_i0 PRJNA977246 18467 327 74.020134 242.04583818 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 355 2.09e-93   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g17475 i0 86.405 163.82874617737 331 37 100 8 1 327 1309261 1308935 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 53572 355 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
30658043 30658043 PRJNA977246_S_NODE_31573_length_218_cov_2.031746_g30581_i0 PRJNA977246 31573 218 2.031746 4.42920628 Salinivenus sp. 1885341 Bacteria Bacteria 47.8 2.73e-5   NR MFP4227947.1 1885341 g30581 i0 78.6 0.825688073394495 28 6 38.5 0 2 85 19 46 MFP4227947.1 DUF1328 domain-containing protein [Salinivenus sp.] diamond 180 47.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinivenus Salinivenus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;