RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA977246", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA977246 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3501698 3501698 PRJNA977246_S_NODE_22323_length_286_cov_2.330739_g21331_i0 PRJNA977246 22323 286 2.330739 6.66591354 Heterolobosea sp. HGG1 1237086 Heterolobosea other_Eukaryota 440 4.829999999999998e-119   NTclustered gi|407750695|gb|JX441981.1| 1237086 g21331 i0 94.406 20.1713286713287 286 16 100 0 1 286 299 14 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 5769 440 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1
3501902 3501902 PRJNA977246_S_NODE_29143_length_232_cov_2.832512_g28151_i0 PRJNA977246 29143 232 2.832512 6.57142784 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 141 4.3e-29   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g28151 i0 78.924 0.961206896551724 223 36 94 10 1 217 4035 4252 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 223 141 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;