RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA977246", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 12 ✖

tax_clade 1

  • Bacteria candidate phyla · 12 ✖

bioproject 1

  • PRJNA977246 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2227238 2227238 PRJNA977246_S_NODE_9262_length_506_cov_7.582809_g8364_i0 PRJNA977246 9262 506 7.582809 38.36901354 Pseudomonadati 3379134 Bacteria Bacteria 119 5.6399999999999995e-30   NR OJU87881.1 1895829 g8364 i0 80.6 3.41501976284585 72 14 42.7 0 283 498 1 72 OJU87881.1 MAG: DNA repair protein RecO [Candidatus Saccharibacteria bacterium 49-20] diamond 1728 120 0.991666666666667 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 49-20
4780035 4780035 PRJNA977246_S_NODE_7304_length_582_cov_6767.213382_g6500_i0 PRJNA977246 7304 582 6767.213382 39385.18188324 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 77.4 6.14e-13   NR MBR3138001.1 2026720 g6500 i0 42.9 0.469072164948454 91 48 44.8 1 499 239 201 291 MBR3138001.1 adenine-specific methyltransferase EcoRI family protein [Candidatus Saccharibacteria bacterium] diamond 273 77.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
6372800 6372800 PRJNA977246_S_NODE_16665_length_350_cov_5931.077882_g15673_i0 PRJNA977246 16665 350 5931.077882 20758.772587 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 77 4.42e-16   NR HCH34397.1 2026720 g15673 i0 67.2 0.497142857142857 58 19 49.7 0 30 203 1 58 HCH34397.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 174 77 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
9879216 9879216 PRJNA977246_S_NODE_23248_length_277_cov_11.588710_g22256_i0 PRJNA977246 23248 277 11.58871 32.1007267 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 379 1.03e-100   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g22256 i0 91.697 74 277 18 99 3 5 277 217527 217252 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 20498 379 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
23903296 23903296 PRJNA977246_S_NODE_10139_length_480_cov_392.396896_g9214_i0 PRJNA977246 10139 480 392.396896 1883.5051008 Candidatus Saccharimonadia bacterium 2890869 Bacteria Bacteria 228 6.180000000000001e-70   NR HSX81222.1 2890869 g9214 i0 77.9 0.93125 149 33 93.1 0 478 32 135 283 HSX81222.1 IS110 family transposase [Candidatus Saccharimonadia bacterium] diamond 447 228 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia       Candidatus Saccharimonadia bacterium
26614389 26614389 PRJNA977246_S_NODE_14701_length_383_cov_3.677966_g13712_i0 PRJNA977246 14701 383 3.677966 14.08660978 Candidatus Saccharibacteria bacterium 32-5 1970481 Bacteria Bacteria 164 1.49e-49   NR OYX53575.1 1970481 g13712 i0 88 0.720626631853786 92 11 72.1 0 17 292 50 141 OYX53575.1 MAG: 50S ribosomal protein L11 [Candidatus Saccharibacteria bacterium 32-50-13] diamond 276 164 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-50-13
27689967 27689967 PRJNA977246_S_NODE_17424_length_340_cov_3.051447_g16432_i0 PRJNA977246 17424 340 3.051447 10.3749198 Candidatus Saccharibacteria bacterium 32-5 1970481 Bacteria Bacteria 69.7 5.03e-12   NR OYX53791.1 1970481 g16432 i0 39.1 0.767647058823529 87 52 75.9 1 338 81 69 155 OYX53791.1 MAG: hypothetical protein B7Y92_01730 [Candidatus Saccharibacteria bacterium 32-50-13] diamond 261 69.7 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-50-13
29394624 29394624 PRJNA977246_S_NODE_24629_length_265_cov_4.800847_g23637_i0 PRJNA977246 24629 265 4.800847 12.72224455 Candidatus Saccharimonadia bacterium 2890869 Bacteria Bacteria 156 2.1099999999999998e-43   NR HSX81222.1 2890869 g23637 i0 82.1 0.950943396226415 84 15 95.1 0 253 2 57 140 HSX81222.1 IS110 family transposase [Candidatus Saccharimonadia bacterium] diamond 252 156 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia       Candidatus Saccharimonadia bacterium
29615264 29615264 PRJNA977246_S_NODE_33350_length_209_cov_2.438889_g32358_i0 PRJNA977246 33350 209 2.438889 5.09727801 Candidatus Saccharibacteria bacterium 32-5 1970481 Bacteria Bacteria 104 4.56e-25   NR OYX53762.1 1970481 g32358 i0 89.5 0.818181818181818 57 6 81.8 0 5 175 267 323 OYX53762.1 MAG: hypothetical protein B7Y92_01580 [Candidatus Saccharibacteria bacterium 32-50-13] diamond 171 104 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-50-13
30026288 30026288 PRJNA977246_S_NODE_44311_length_168_cov_2.294964_g43319_i0 PRJNA977246 44311 168 2.294964 3.85553952 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 61.2 1.04e-9   NR HEY0965628.1 2973664 g43319 i0 60 0.803571428571429 45 18 80.4 0 137 3 16 60 HEY0965628.1 GNAT family N-acetyltransferase [Candidatus Saccharimonadales bacterium] diamond 135 61.2 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
30152266 30152266 PRJNA977246_S_NODE_44212_length_168_cov_3.172662_g43220_i0 PRJNA977246 44212 168 3.172662 5.33007216 Candidatus Saccharibacteria bacterium 2026720 Bacteria Bacteria 48.5 1.17e-4   NR QQS17319.1 2026720 g43220 i0 91.7 0.428571428571429 24 2 42.9 0 74 3 4 27 QQS17319.1 MAG: thymidylate synthase [Candidatus Saccharibacteria bacterium] diamond 72 48.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31422723 31422723 PRJNA977246_S_NODE_46116_length_163_cov_2.798507_g45124_i0 PRJNA977246 46116 163 2.798507 4.56156641 Bacteria 2 Bacteria Bacteria 90.5 4.14e-20   NR OYX53696.1 1970481 g45124 i0 90.2 1.87730061349693 51 5 93.9 0 162 10 79 129 OYX53696.1 MAG: hypothetical protein B7Y92_02015 [Candidatus Saccharibacteria bacterium 32-50-13] diamond 306 90.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-50-13

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;