RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA977246", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Absconditibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA977246 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
951797 951797 PRJNA977246_S_NODE_8381_length_538_cov_8.754420_g7522_i0 PRJNA977246 8381 538 8.75442 47.0987796 uncultured candidate division SR1 bacterium 221237 Bacteria Bacteria 580 5.4499999999999985e-161   NTclustered gi|336020567|gb|JF917288.1| 221237 g7522 i0 88.32 94.1486988847584 488 52 90 5 53 538 115 599 Uncultured candidate division SR1 bacterium clone B1Q1E-91f-JRD28 16S ribosomal RNA gene, partial sequence blastn 50652 580 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         uncultured candidate division SR1 bacterium
6054972 6054972 PRJNA977246_S_NODE_4605_length_763_cov_11.337875_g4013_i0 PRJNA977246 4605 763 11.337875 86.50798625 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 804 0   NTclustered gi|563351663|gb|CP006913.1| 1394709 g4013 i0 86.28 88.0943643512451 758 83 98 20 1 746 128834 129582 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 67216 804 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1
29678392 29678392 PRJNA977246_S_NODE_30610_length_223_cov_3.221649_g29618_i0 PRJNA977246 30610 223 3.221649 7.18427727 candidate division SR1 bacterium 2044938 Bacteria Bacteria 42.7 0.00557   NR PID34526.1 2044938 g29618 i0 73.9 1.23766816143498 23 6 30.9 0 130 62 3 25 PID34526.1 MAG: hypothetical protein CR971_02820 [candidate division SR1 bacterium] diamond 276 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
31890994 31890994 PRJNA977246_S_NODE_37717_length_190_cov_2.565217_g36725_i0 PRJNA977246 37717 190 2.565217 4.8739123 candidate division SR1 bacterium 2044938 Bacteria Bacteria 53.1 4.56e-7   NR MCX6822792.1 2044938 g36725 i0 61 1.29473684210526 41 16 64.7 0 125 3 1 41 MCX6822792.1 hypothetical protein [candidate division SR1 bacterium] diamond 246 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;