RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA977246", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA977246 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7329180 7329180 PRJNA977246_S_NODE_34266_length_204_cov_929.217143_g33274_i0 PRJNA977246 34266 204 929.217143 1895.60297172 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 265 2.1e-66   NTclustered gi|909719647|gb|KT185627.1| 5778 g33274 i0 95.21 2.33333333333333 167 8 82 0 33 199 25807 25973 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 476 265 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14978941 14978941 PRJNA977246_S_NODE_20992_length_298_cov_7022.074349_g20000_i0 PRJNA977246 20992 298 7022.074349 20925.78156002 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 368 2.42e-97   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g20000 i0 94.538 58.9664429530201 238 13 80 0 51 288 1547 1784 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17572 368 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
17846408 17846408 PRJNA977246_S_NODE_23674_length_273_cov_14.032787_g22682_i0 PRJNA977246 23674 273 14.032787 38.30950851 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 483 7.5e-132   NTclustered gi|909719645|gb|KT185625.1| 5778 g22682 i0 100 24.2454212454212 261 0 96 0 13 273 3863 3603 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6619 483 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21353181 21353181 PRJNA977246_S_NODE_23457_length_275_cov_150.056911_g22465_i0 PRJNA977246 23457 275 150.056911 412.65650525 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 431 2.779999999999999e-116   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g22465 i0 94.964 40.1272727272727 278 9 100 4 1 275 3933 4208 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11035 431 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
21353254 21353254 PRJNA977246_S_NODE_25917_length_254_cov_5.706667_g24925_i0 PRJNA977246 25917 254 5.706667 14.49493418 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 457 4.18e-124   NTclustered gi|300078496|gb|GU001158.1| 5778 g24925 i0 99.6 2.44094488188976 250 1 98 0 1 250 3668 3419 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 620 457 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;