RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA976345" and tax_phylum = "Nitrososphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA976345 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2223118 2223118 PRJNA976345_P_NODE_124802_length_178_cov_1.559441_g123194_i0 PRJNA976345 124802 178 1.559441 2.77580498 Candidatus Nitrosocosmicus franklandianus 1798806 Archaea Archaea 56.5 0.001   NTclustered gi|1599533355|emb|LR216287.1| 1798806 g123194 i0 100 0.168539325842697 30 0 17 0 85 114 1183389 1183360 Candidatus Nitrosocosmicus franklandus isolate NFRAN1 genome assembly, chromosome: NFRAN blastn 30 56.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus franklandianus
12427119 12427119 PRJNA976345_P_NODE_149230_length_166_cov_4.015267_g147622_i0 PRJNA976345 149230 166 4.015267 6.66534322 uncultured Candidatus Nitrosopumilus sp. 517606 Archaea Archaea 52.8 0.014   NTclustered gi|2518550870|emb|OX638319.1| 517606 g147622 i0 100 0.168674698795181 28 0 17 0 71 98 249961 249988 MAG: uncultured Candidatus Nitrosopumilus sp. isolate a9bb1b8d-3405-4f78-8bb0-675615731146 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus uncultured Candidatus Nitrosopumilus sp.
28194465 28194465 PRJNA976345_P_NODE_40526_length_270_cov_3.234043_g38918_i0 PRJNA976345 40526 270 3.234043 8.7319161 Nitrosopumilus sp. 2024843 Archaea Archaea 60.5 2.89e-8   NR MCH2406285.1 2024843 g38918 i0 40 1.78888888888889 85 49 93.3 2 15 266 445 528 MCH2406285.1 hypothetical protein [Nitrosopumilus sp.] diamond 483 60.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
29962902 29962902 PRJNA976345_P_NODE_128111_length_176_cov_2.340426_g126503_i0 PRJNA976345 128111 176 2.340426 4.11914976 Candidatus Nitrosocosmicus sp. 2109671 Archaea Archaea 45.4 0.00169   NR HKU83278.1 2109671 g126503 i0 44.1 1.00568181818182 59 28 92 2 167 6 194 252 HKU83278.1 reverse transcriptase family protein [Candidatus Nitrosocosmicus sp.] diamond 177 45.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus sp.
30562883 30562883 PRJNA976345_P_NODE_87713_length_199_cov_1.725610_g86105_i0 PRJNA976345 87713 199 1.72561 3.4339639 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 40.8 0.0255   NR WP_196817592.1 1353260 g86105 i0 42.2 0.678391959798995 45 26 67.8 0 187 53 3 47 WP_196817592.1 hypothetical protein [Candidatus Nitrosocosmicus oleophilus] diamond 135 40.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
30562888 30562888 PRJNA976345_P_NODE_95193_length_193_cov_2.126582_g93585_i0 PRJNA976345 95193 193 2.126582 4.10430326 Nitrososphaerota archaeon 2026795 Archaea Archaea 40 0.0439   NR MBI1658427.1 2026795 g93585 i0 50 0.49740932642487 32 16 49.7 0 116 21 44 75 MBI1658427.1 hypothetical protein [Nitrososphaerota archaeon] diamond 96 40 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
32492347 32492347 PRJNA976345_P_NODE_64199_length_223_cov_6.218085_g62591_i0 PRJNA976345 64199 223 6.218085 13.86632955 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 65.1 3.83e-10   NR MDW3615052.1 2169593 g62591 i0 42.6 1.80269058295964 68 39 91.5 0 1 204 60 127 MDW3615052.1 ribonuclease H family protein [Nitrososphaeraceae archaeon] diamond 402 65.1 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;