RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA976345", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 4 ✖

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA976345 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6051725 6051725 PRJNA976345_P_NODE_41205_length_268_cov_3.274678_g39597_i0 PRJNA976345 41205 268 3.274678 8.77613704 Fretibacterium fastidiosum 651822 Bacteria Bacteria 340 4.68e-89   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g39597 i0 90.335 516.682835820896 269 12 100 8 1 268 68449 68194 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 138471 340 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
27374038 27374038 PRJNA976345_P_NODE_51423_length_244_cov_3.980861_g49815_i0 PRJNA976345 51423 244 3.980861 9.71330084 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 145 4.85e-43   NR WP_299076663.1 1678694 g49815 i0 93.8 0.983606557377049 80 5 98.4 0 3 242 51 130 WP_299076663.1 DUF4418 family protein [uncultured Fretibacterium sp.] diamond 240 145 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
28700002 28700002 PRJNA976345_P_NODE_184747_length_154_cov_1.647059_g183139_i0 PRJNA976345 184747 154 1.647059 2.53647086 Synergistaceae bacterium 2053624 Bacteria Bacteria 80.1 3.65e-16   NR MBR0258493.1 2053624 g183139 i0 73.5 7.5974025974026 49 13 95.5 0 152 6 277 325 MBR0258493.1 iron-containing alcohol dehydrogenase [Synergistaceae bacterium] diamond 1170 80.1 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
29836476 29836476 PRJNA976345_P_NODE_82491_length_203_cov_2.952381_g80883_i0 PRJNA976345 82491 203 2.952381 5.99333343 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 79 3.14e-15   NR WP_299301996.1 1678694 g80883 i0 100 0.576354679802956 39 0 57.6 0 196 80 1 39 WP_299301996.1 ABC transporter permease [uncultured Fretibacterium sp.] diamond 117 79 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;