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contig_metadata

21 rows where bioproject = "PRJNA976345", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 21 ✖

tax_kingdom 1

  • Pseudomonadati · 21 ✖

bioproject 1

  • PRJNA976345 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3498346 3498346 PRJNA976345_P_NODE_121503_length_178_cov_2.391608_g119895_i0 PRJNA976345 121503 178 2.391608 4.25706224 Myxococcus stipitatus 83455 Bacteria Bacteria 52.8 0.015   NTclustered gi|441484664|gb|CP004025.1| 1278073 g119895 i0 100 0.157303370786517 28 0 16 0 19 46 3245473 3245446 Myxococcus stipitatus DSM 14675, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus
13701399 13701399 PRJNA976345_P_NODE_122311_length_178_cov_2.293706_g120703_i0 PRJNA976345 122311 178 2.293706 4.08279668 Myxococcus sp. SDU36 2831967 Bacteria Bacteria 60.2 9e-5   NTclustered gi|2513984958|gb|CP077414.1| 2831967 g120703 i0 97.143 0.376404494382022 35 1 20 0 40 74 1506014 1506048 Myxococcus sp. SDU36 chromosome, complete genome blastn 67 60.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp. SDU36
22624792 22624792 PRJNA976345_P_NODE_121178_length_178_cov_2.433566_g119570_i0 PRJNA976345 121178 178 2.433566 4.33174748 Haliangium ochraceum 80816 Bacteria Bacteria 52.8 0.015   NTclustered gi|262076673|gb|CP001804.1| 502025 g119570 i0 100 0.157303370786517 28 0 16 0 2 29 5422861 5422888 Haliangium ochraceum DSM 14365, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
22625251 22625251 PRJNA976345_P_NODE_196978_length_150_cov_3.234783_g195370_i0 PRJNA976345 196978 150 3.234783 4.8521745 Pyxidicoccus parkwayensis 2813578 Bacteria Bacteria 110 7.15e-20   NTclustered gi|1998505907|gb|CP071090.1| 2813578 g195370 i0 94.366 6.50666666666667 71 4 47 0 2 72 5214977 5215047 Pyxidicoccus parkwaysis strain SCPEA02 chromosome blastn 976 110 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus parkwayensis
26740777 26740777 PRJNA976345_P_NODE_92901_length_195_cov_1.487500_g91293_i0 PRJNA976345 92901 195 1.4875 2.900625 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 75.9 4.06e-14   NR MBV8361473.1 2026735 g91293 i0 67.9 0.815384615384615 53 17 81.5 0 11 169 625 677 MBV8361473.1 type IV secretory system conjugative DNA transfer family protein [Deltaproteobacteria bacterium] diamond 159 75.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27026010 27026010 PRJNA976345_P_NODE_154922_length_164_cov_2.031008_g153314_i0 PRJNA976345 154922 164 2.031008 3.33085312 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 63.5 5.79e-10   NR MCZ6806484.1 2026735 g153314 i0 53.7 0.98780487804878 54 25 98.8 0 3 164 199 252 MCZ6806484.1 HD domain-containing protein [Deltaproteobacteria bacterium] diamond 162 63.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27089356 27089356 PRJNA976345_P_NODE_129442_length_176_cov_1.113475_g127834_i0 PRJNA976345 129442 176 1.113475 1.959716 Sorangium cellulosum 56 Bacteria Bacteria 47.8 2.57e-4   NR WP_242516015.1 56 g127834 i0 47.1 0.869318181818182 51 26 85.2 1 157 8 412 462 WP_242516015.1 hypothetical protein [Sorangium cellulosum] diamond 153 47.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
27373991 27373991 PRJNA976345_P_NODE_122763_length_178_cov_2.237762_g121155_i0 PRJNA976345 122763 178 2.237762 3.98321636 Labilithrix sp. 1971228 Bacteria Bacteria 48.5 1.42e-4   NR MBX3260983.1 1971228 g121155 i0 49 2.02247191011236 49 24 82.6 1 31 177 31 78 MBX3260983.1 N-acetyl sugar amidotransferase [Labilithrix sp.] diamond 360 48.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
27531566 27531566 PRJNA976345_P_NODE_148303_length_167_cov_1.598485_g146695_i0 PRJNA976345 148303 167 1.598485 2.66946995 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 41.2 0.0474   NR MBN1255368.1 2026735 g146695 i0 44 0.898203592814371 50 25 84.4 1 159 19 323 372 MBN1255368.1 N-6 DNA methylase [Deltaproteobacteria bacterium] diamond 150 41.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28478831 28478831 PRJNA976345_P_NODE_105806_length_186_cov_1.549669_g104198_i0 PRJNA976345 105806 186 1.549669 2.88238434 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 52 2.26e-6   NR MBW1799201.1 2026735 g104198 i0 41.7 1.79032258064516 60 33 93.5 1 8 181 47 106 MBW1799201.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 333 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29205178 29205178 PRJNA976345_P_NODE_118049_length_179_cov_1.458333_g116441_i0 PRJNA976345 118049 179 1.458333 2.61041607 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 41.6 0.0404   NR MBP1735216.1 2026735 g116441 i0 72 0.418994413407821 25 7 41.9 0 179 105 294 318 MBP1735216.1 acetyl-CoA hydrolase/transferase [Deltaproteobacteria bacterium] diamond 75 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29274212 29274212 PRJNA976345_P_NODE_167189_length_160_cov_1.224000_g165581_i0 PRJNA976345 167189 160 1.224 1.9584 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 92.4 4.1700000000000006e-21   NR MDJ0789865.1 2818507 g165581 i0 90.4 3.9 52 5 97.5 0 160 5 188 239 MDJ0789865.1 hypothetical protein [Myxococcota bacterium] diamond 624 92.8 0.995689655172414 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29369146 29369146 PRJNA976345_P_NODE_47229_length_253_cov_2.788991_g45621_i0 PRJNA976345 47229 253 2.788991 7.05614723 Pseudomonadati 3379134 Bacteria Bacteria 43.1 0.0162   NR MCH9682027.1 2026735 g45621 i0 39.1 1.10276679841897 46 25 51 1 215 87 68 113 MCH9682027.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 279 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29520737 29520737 PRJNA976345_P_NODE_179630_length_155_cov_289.858333_g178022_i0 PRJNA976345 179630 155 289.858333 449.28041615 Myxococcales bacterium 2026763 Bacteria Bacteria 42 0.02   NR MBR56548.1 2026763 g178022 i0 63 0.52258064516129 27 10 52.3 0 92 12 202 228 MBR56548.1 hypothetical protein [Myxococcales bacterium] diamond 81 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30026173 30026173 PRJNA976345_P_NODE_103731_length_187_cov_2.190789_g102123_i0 PRJNA976345 103731 187 2.190789 4.09677543 Labilithrix luteola 1391654 Bacteria Bacteria 87 4.44e-18   NR WP_146651704.1 1391654 g102123 i0 79.3 1.90909090909091 58 12 93 0 175 2 596 653 WP_146651704.1 PD40 domain-containing protein [Labilithrix luteola] diamond 357 87 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
30057484 30057484 PRJNA976345_P_NODE_121391_length_178_cov_2.405594_g119783_i0 PRJNA976345 121391 178 2.405594 4.28195732 Myxococcales bacterium 2026763 Bacteria Bacteria 53.5 6e-7   NR RYE86195.1 2026763 g119783 i0 96 0.421348314606742 25 1 42.1 0 104 178 17 41 RYE86195.1 MAG: hypothetical protein EOO75_16025 [Myxococcales bacterium] diamond 75 53.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30095323 30095323 PRJNA976345_P_NODE_161792_length_162_cov_0.944882_g160184_i0 PRJNA976345 161792 162 0.944882 1.53070884 Bacteria candidate phyla 1783234 Bacteria Bacteria 82.8 7.55e-17   NR HEX9576391.1 2026763 g160184 i0 91.5 13.2222222222222 47 4 87 0 142 2 1 47 HEX9576391.1 RNA polymerase sigma factor [Myxococcales bacterium] diamond 2142 82.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31890917 31890917 PRJNA976345_P_NODE_181377_length_155_cov_1.658333_g179769_i0 PRJNA976345 181377 155 1.658333 2.57041615 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 75.5 2.95e-14   NR MEO8183369.1 2026735 g179769 i0 77.3 0.851612903225806 44 10 85.2 0 23 154 7 50 MEO8183369.1 sigma-70 family RNA polymerase sigma factor [Deltaproteobacteria bacterium] diamond 132 75.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32207442 32207442 PRJNA976345_P_NODE_94658_length_193_cov_225.145570_g93050_i0 PRJNA976345 94658 193 225.14557 434.5309501 Myxococcales bacterium 2026763 Bacteria Bacteria 41.6 0.0445   NR MBR56548.1 2026763 g93050 i0 63 0.419689119170984 27 10 42 0 102 182 202 228 MBR56548.1 hypothetical protein [Myxococcales bacterium] diamond 81 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32213679 32213679 PRJNA976345_P_NODE_95878_length_193_cov_1.259494_g94270_i0 PRJNA976345 95878 193 1.259494 2.43082342 Pseudomonadati 3379134 Bacteria Bacteria 42.4 0.0254   NR MBL8742302.1 2026763 g94270 i0 53.7 1.47668393782383 41 15 63.7 1 164 42 199 235 MBL8742302.1 serine/threonine protein kinase [Myxococcales bacterium] diamond 285 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32870308 32870308 PRJNA976345_P_NODE_69780_length_216_cov_291.591160_g68172_i0 PRJNA976345 69780 216 291.59116 629.8369056 Myxococcales bacterium 2026763 Bacteria Bacteria 42.7 0.0232   NR MBR56548.1 2026763 g68172 i0 63 0.375 27 10 37.5 0 125 205 202 228 MBR56548.1 hypothetical protein [Myxococcales bacterium] diamond 81 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;