RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA976345", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA976345 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4775983 4775983 PRJNA976345_P_NODE_114324_length_181_cov_1.438356_g112716_i0 PRJNA976345 114324 181 1.438356 2.60342436 Rozella allomycis CSF55 988480 Fungi Fungi 99.4 1.9e-22   NR RKP19350.1 988480 g112716 i0 78.9 1.88950276243094 57 12 94.5 0 172 2 269 325 RKP19350.1 methylcrotonyl-CoA carboxylase [Rozella allomycis CSF55] diamond 342 99.4 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
32492322 32492322 PRJNA976345_P_NODE_27399_length_322_cov_2.149826_g25795_i0 PRJNA976345 27399 322 2.149826 6.92243972 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 58.9 1.59e-7   NR PJF18706.1 1246581 g25795 i0 71.4 0.326086956521739 35 10 32.6 0 195 299 1 35 PJF18706.1 NAT10, partial [Paramicrosporidium saccamoebae] diamond 105 58.9 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;