RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA976345", tax_clade = "Stenosarchaea group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 6 ✖

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 6 ✖

bioproject 1

  • PRJNA976345 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2224019 2224019 PRJNA976345_P_NODE_61802_length_227_cov_1.739583_g60194_i0 PRJNA976345 61802 227 1.739583 3.94885341 Methanolobus sp. ZRKC2 3125783 Archaea Archaea 52.8 0.02   NTclustered gi|2708450131|gb|CP146980.1| 3125783 g60194 i0 100 0.123348017621145 28 0 12 0 8 35 205498 205525 Methanolobus sp. ZRKC2 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus sp. ZRKC2
8601598 8601598 PRJNA976345_P_NODE_59347_length_230_cov_3.482051_g57739_i0 PRJNA976345 59347 230 3.482051 8.0087173 Candidatus Methanospirare jalkutatii 2977098 Archaea Archaea 52.8 0.021   NTclustered gi|2324523409|gb|CP110382.1| 2977098 g57739 i0 100 0.243478260869565 28 0 12 0 16 43 296054 296081 MAG: Candidatus Methanospirare jalkutatii isolate FWG175 chromosome blastn 56 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanospirareceae Candidatus Methanospirare Candidatus Methanospirare jalkutatii
15294887 15294887 PRJNA976345_P_NODE_119612_length_178_cov_2.895105_g118004_i0 PRJNA976345 119612 178 2.895105 5.1532869 root 1 Root_unresolved Root_unresolved 52.8 0.015   NTclustered gi|2105355784|gb|CP084090.1| 1586233 g118004 i0 100 0.353932584269663 28 0 16 0 22 49 706159 706186 Halomicrobium urmianum strain IBRC-M: 10911 chromosome, complete genome blastn 63 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium urmianum
22624851 22624851 PRJNA976345_P_NODE_131238_length_175_cov_1.307143_g129630_i0 PRJNA976345 131238 175 1.307143 2.28750025 Methanochimaera problematica 2609417 Archaea Archaea 52.8 0.015   NTclustered gi|2594454307|gb|CP043875.1| 2609417 g129630 i0 100 0.16 28 0 16 0 119 146 491879 491906 Methanochimaera problematica strain FWC-SCC4 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanochimaera Methanochimaera problematica
23901457 23901457 PRJNA976345_P_NODE_84219_length_202_cov_1.670659_g82611_i0 PRJNA976345 84219 202 1.670659 3.37473118 Natrarchaeobaculum aegyptiacum 745377 Archaea Archaea 62.1 2.92e-5   NTclustered gi|1196598842|gb|CP019893.1| 745377 g82611 i0 92.857 0.207920792079208 42 3 21 0 67 108 2705856 2705815 Natrarchaeobaculum aegyptiacum strain JW/NM-HA 15 chromosome, complete genome blastn 42 62.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobaculum Natrarchaeobaculum aegyptiacum
27405531 27405531 PRJNA976345_P_NODE_96583_length_192_cov_2.031847_g94975_i0 PRJNA976345 96583 192 2.031847 3.90114624 Methanocorpusculum sp. 2058474 Archaea Archaea 43.9 0.00708   NR HJJ77687.1 2058474 g94975 i0 46.3 0.640625 41 22 64.1 0 126 4 4 44 HJJ77687.1 hypothetical protein [Methanocorpusculum sp.] diamond 123 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;