RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA976345", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA976345 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9877056 9877056 PRJNA976345_P_NODE_88288_length_198_cov_3.429448_g86680_i0 PRJNA976345 88288 198 3.429448 6.79030704 Victivallaceae bacterium 2793042 Bacteria Bacteria 52.8 0.017   NTclustered gi|2621704067|emb|OY761536.1| 2793042 g86680 i0 100 0.141414141414141 28 0 14 0 139 166 3021920 3021893 MAG: Victivallaceae bacterium isolate e353ef71-700a-4510-b67c-5bed4426050c genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
23900533 23900533 PRJNA976345_P_NODE_164659_length_160_cov_6.184000_g163051_i0 PRJNA976345 164659 160 6.184 9.8944 Lentisphaera profundi 1658616 Bacteria Bacteria 54.7 0.004   NTclustered gi|2445967839|gb|CP117812.1| 1658616 g163051 i0 100 0.18125 29 0 18 0 112 140 2068251 2068279 Lentisphaera profundi strain SAORIC-696 chromosome 2, complete sequence blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae Lentisphaera Lentisphaera profundi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;