RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA976345" and tax_clade = "Human papillomavirus types"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 5 ✖

bioproject 1

  • PRJNA976345 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1267111 1267111 PRJNA976345_P_NODE_184761_length_154_cov_1.638655_g183153_i0 PRJNA976345 184761 154 1.638655 2.5235287 Betapapillomavirus 333922 Viruses Viruses 285 1.14e-72   NTclustered gi|1559669458|gb|MH777293.2| 10566 g183153 i0 100 3.19480519480519 154 0 100 0 1 154 2170 2017 MAG: Human papillomavirus isolate HPV-mSK_151, partial genome blastn 492 285 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
7325919 7325919 PRJNA976345_P_NODE_172206_length_158_cov_1.617886_g170598_i0 PRJNA976345 172206 158 1.617886 2.55625988 Human papillomavirus 10566 Viruses Viruses 292 7.07e-75   NTclustered gi|1480687842|gb|MH777175.1| 10566 g170598 i0 100 2 158 0 100 0 1 158 3090 2933 MAG: Human papillomavirus isolate HPV-mSK_027, complete genome blastn 316 292 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
11470829 11470829 PRJNA976345_P_NODE_139829_length_171_cov_1.176471_g138221_i0 PRJNA976345 139829 171 1.176471 2.01176541 Betapapillomavirus 333922 Viruses Viruses 311 2.14e-80   NTclustered gi|1559669458|gb|MH777293.2| 10566 g138221 i0 99.415 14.6315789473684 171 1 100 0 1 171 2366 2536 MAG: Human papillomavirus isolate HPV-mSK_151, partial genome blastn 2502 311 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
17844986 17844986 PRJNA976345_P_NODE_67154_length_220_cov_1.497297_g65546_i0 PRJNA976345 67154 220 1.497297 3.2940534 Betapapillomavirus 333922 Viruses Viruses 407 3.61e-109   NTclustered gi|1559669458|gb|MH777293.2| 10566 g65546 i0 100 3.99545454545455 220 0 100 0 1 220 4667 4448 MAG: Human papillomavirus isolate HPV-mSK_151, partial genome blastn 879 407 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
25493798 25493798 PRJNA976345_P_NODE_33720_length_293_cov_1.631783_g32113_i0 PRJNA976345 33720 293 1.631783 4.78112419 Betapapillomavirus 333922 Viruses Viruses 542 1.32e-149   NTclustered gi|1559669458|gb|MH777293.2| 10566 g32113 i0 100 16.3720136518771 293 0 100 0 1 293 7096 6804 MAG: Human papillomavirus isolate HPV-mSK_151, partial genome blastn 4797 542 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;