RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA976345", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Collieribacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Collieribacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA976345 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18800358 18800358 PRJNA976345_P_NODE_50555_length_246_cov_2.246445_g48947_i0 PRJNA976345 50555 246 2.246445 5.5262547 Candidatus Collierbacteria bacterium RIFOXYD1_FULL_4 2053540 Bacteria Bacteria 155 1.09e-44   NR OGD81566.1 1817731 g48947 i0 97.5 0.98780487804878 81 2 98.8 0 2 244 45 125 OGD81566.1 MAG: Holliday junction DNA helicase RuvB [Candidatus Collierbacteria bacterium RIFOXYD1_FULL_40_9] diamond 243 155 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium RIFOXYD1_FULL_40_9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;