RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA975724", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 5 ✖

tax_phylum 1

  • Pisuviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA975724 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3496956 3496956 PRJNA975724_S_NODE_48563_length_300_cov_1.722467_g48382_i0 PRJNA975724 48563 300 1.722467 5.167401 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.008   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g48382 i0 96.97 0.203333333333333 33 0 11 1 1 33 13 44 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 61 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
7323647 7323647 PRJNA975724_S_NODE_23906_length_370_cov_0.949495_g23725_i0 PRJNA975724 23906 370 0.949495 3.5131315 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 58.4 7.56e-4   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g23725 i0 100 0.313513513513514 31 0 8 0 1 31 56 86 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 116 58.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
16248353 16248353 PRJNA975724_S_NODE_15973_length_407_cov_2.862275_g15792_i0 PRJNA975724 15973 407 2.862275 11.64945925 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.011   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g15792 i0 100 0.14004914004914 29 0 7 0 1 29 13 41 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
20072394 20072394 PRJNA975724_S_NODE_26256_length_361_cov_1.690972_g26075_i0 PRJNA975724 26256 361 1.690972 6.10440892 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 58.4 7.36e-4   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g26075 i0 100 0.321329639889197 31 0 9 0 331 361 86 56 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 116 58.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
23898053 23898053 PRJNA975724_S_NODE_20099_length_386_cov_2.130990_g19918_i0 PRJNA975724 20099 386 2.13099 8.2256214 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 56.5 0.003   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g19918 i0 100 0.297927461139896 30 0 8 0 357 386 85 56 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 115 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;