RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA975724" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA975724 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20074207 20074207 PRJNA975724_S_NODE_9756_length_452_cov_21.978892_g9575_i0 PRJNA975724 9756 452 21.978892 99.34459184 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 178 1.83e-50   NR XP_068353607.1 1144522 g9575 i0 76.2 2.41592920353982 122 29 81 0 449 84 363 484 XP_068353607.1 enolase family protein [Tritrichomonas foetus] diamond 1092 178 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
22944566 22944566 PRJNA975724_S_NODE_91358_length_241_cov_0.916667_g91177_i0 PRJNA975724 91358 241 0.916667 2.20916747 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 66.2 1.91e-10   NR XP_068360013.1 1144522 g91177 i0 45.9 0.921161825726141 74 37 92.1 1 19 240 505 575 XP_068360013.1 uncharacterized protein TRFO_25063 [Tritrichomonas foetus] diamond 222 66.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
24218540 24218540 PRJNA975724_S_NODE_87299_length_244_cov_1.064327_g87118_i0 PRJNA975724 87299 244 1.064327 2.59695788 Trichomonas 5721 Parabasalia other_Eukaryota 89 6.78e-19   NR AAD45335.1 5722 g87118 i0 63.9 1.5 61 22 75 0 3 185 218 278 AAD45335.1 enolase 2, partial [Trichomonas vaginalis] diamond 366 89 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27310716 27310716 PRJNA975724_S_NODE_9263_length_457_cov_24.906250_g9082_i0 PRJNA975724 9263 457 24.90625 113.8215625 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 44.7 0.00797   NR XP_068357934.1 1144522 g9082 i0 52.6 0.971553610503282 38 18 24.9 0 449 336 47 84 XP_068357934.1 40S ribosomal protein S21 [Tritrichomonas foetus] diamond 444 44.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28352450 28352450 PRJNA975724_S_NODE_72526_length_259_cov_1.241935_g72345_i0 PRJNA975724 72526 259 1.241935 3.21661165 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 49.3 1.85e-4   NR XP_067769577.1 135588 g72345 i0 31.7 1.8996138996139 82 52 90.3 2 248 15 159 240 XP_067769577.1 Plexin repeat family protein [Histomonas meleagridis] diamond 492 49.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29047224 29047224 PRJNA975724_S_NODE_11608_length_436_cov_6.746556_g11427_i0 PRJNA975724 11608 436 6.746556 29.41498416 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 69.7 1.13e-10   NR XP_068364921.1 1144522 g11427 i0 33.9 1.46559633027523 109 65 70.9 3 433 125 469 576 XP_068364921.1 uncharacterized protein TRFO_18680 [Tritrichomonas foetus] diamond 639 69.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29804841 29804841 PRJNA975724_S_NODE_41051_length_317_cov_1.795082_g40870_i0 PRJNA975724 41051 317 1.795082 5.69040994 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 95.5 7.410000000000001e-21   NR XP_067778432.1 135588 g40870 i0 59.7 0.728706624605678 77 29 72.9 1 31 261 261 335 XP_067778432.1 cell division cycle protein [Histomonas meleagridis] diamond 231 95.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30948717 30948717 PRJNA975724_S_NODE_66594_length_268_cov_1.184615_g66413_i0 PRJNA975724 66594 268 1.184615 3.1747682 root 1 Root_unresolved Root_unresolved 45.8 0.00406   NR XP_001300572.1 412133 g66413 i0 71.4 0.996268656716418 28 8 31.3 0 240 157 310 337 XP_001300572.1 protein kinase protein [Trichomonas vaginalis G3] diamond 267 46.2 0.991341991341991 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;