RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA975724", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA975724 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27626456 27626456 PRJNA975724_S_NODE_40404_length_319_cov_0.894309_g40223_i0 PRJNA975724 40404 319 0.894309 2.85284571 Nitrosarchaeum sp. 2026886 Archaea Archaea 63.9 2.96e-9   NR MBI2127885.1 2026886 g40223 i0 34.9 1.99373040752351 106 65 97.8 2 317 6 143 246 MBI2127885.1 tandem-95 repeat protein [Nitrosarchaeum sp.] diamond 636 63.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp.
29236673 29236673 PRJNA975724_S_NODE_34789_length_333_cov_2.369231_g34608_i0 PRJNA975724 34789 333 2.369231 7.88953923 Nitrosopumilus sp. 2024843 Archaea Archaea 43.9 0.0397   NR MDH5569133.1 2024843 g34608 i0 25 0.972972972972973 108 72 91.9 2 4 309 254 358 MDH5569133.1 cysteine--tRNA ligase [Nitrosopumilus sp.] diamond 324 43.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;