RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA975724", tax_phylum = "Methanobacteriota" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA975724 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
945647 945647 PRJNA975724_S_NODE_2181_length_647_cov_6.168990_g2011_i0 PRJNA975724 2181 647 6.16899 39.9133653 root 1 Root_unresolved Root_unresolved 226 7.2099999999999995e-68   NR MBX7076496.1 2099680 g2011 i0 60.3 6.12982998454405 199 79 92.3 0 2 598 292 490 MBX7076496.1 F0F1 ATP synthase subunit alpha [Methanobacteriaceae archaeon] diamond 3966 226 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
23898907 23898907 PRJNA975724_S_NODE_52539_length_292_cov_2.109589_g52358_i0 PRJNA975724 52539 292 2.109589 6.15999988 Halogeometricum borinquense 60847 Archaea Archaea 56.5 0.002   NTclustered gi|1810666233|gb|CP048739.1| 60847 g52358 i0 96.97 0.113013698630137 33 1 11 0 58 90 3003417 3003385 Halogeometricum borinquense strain wsp4 chromosome, complete genome blastn 33 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogeometricum Halogeometricum borinquense
27278956 27278956 PRJNA975724_S_NODE_19203_length_390_cov_2.835962_g19022_i0 PRJNA975724 19203 390 2.835962 11.0602518 Thermococci archaeon 2250254 Archaea Archaea 68.9 1.66e-11   NR NPA48192.1 2250254 g19022 i0 47.5 0.469230769230769 61 32 46.9 0 2 184 119 179 NPA48192.1 nicotinamidase [Thermococci archaeon] diamond 183 68.9 1 Archaea   Methanobacteriati Methanobacteriota Thermococci       Thermococci archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;