RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA975724" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA975724 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25493323 25493323 PRJNA975724_S_NODE_5060_length_521_cov_2.857143_g4881_i0 PRJNA975724 5060 521 2.857143 14.88571503 Bacteria 2 Bacteria Bacteria 125 6.77e-32   NR WP_114607635.1 1101 g4881 i0 70.7 11.5566218809981 92 27 53 0 510 235 158 249 WP_114607635.1 MULTISPECIES: triose-phosphate isomerase [Prosthecochloris] diamond 6021 125 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris  
29716106 29716106 PRJNA975724_S_NODE_510_length_984_cov_10.781559_g420_i0 PRJNA975724 510 984 10.781559 106.09054056 Pseudomonadati 3379134 Bacteria Bacteria 198 7.789999999999999e-57   NR MEI8033403.1 2067991 g420 i0 47.5 2.88719512195122 244 112 74.4 7 984 253 30 257 MEI8033403.1 SDR family oxidoreductase [Chlorobiaceae bacterium] diamond 2841 198 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;