RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA975724", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 11 ✖

tax_kingdom 1

  • Orthornavirae · 11 ✖

bioproject 1

  • PRJNA975724 · 11 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2221666 2221666 PRJNA975724_S_NODE_48562_length_300_cov_1.731278_g48381_i0 PRJNA975724 48562 300 1.731278 5.193834 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.008   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g48381 i0 94.444 0.213333333333333 36 1 12 1 1 36 8 42 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 64 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
3497938 3497938 PRJNA975724_S_NODE_85723_length_245_cov_1.343023_g85542_i0 PRJNA975724 85723 245 1.343023 3.29040635 Carlavirus latensdianthi 3427766 Viruses Viruses 52.8 0.022   NTclustered gi|1995060321|gb|MN450069.1| 12164 g85542 i0 100 0.114285714285714 28 0 11 0 1 28 14 41 Carnation latent virus isolate KL, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
3498159 3498159 PRJNA975724_S_NODE_93343_length_231_cov_2.259494_g93162_i0 PRJNA975724 93343 231 2.259494 5.21943114 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.006   NTclustered gi|1995060321|gb|MN450069.1| 12164 g93162 i0 100 0.61038961038961 29 0 13 0 203 231 41 13 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
7324678 7324678 PRJNA975724_S_NODE_64846_length_271_cov_1.085859_g64665_i0 PRJNA975724 64846 271 1.085859 2.94267789 Pestivirus bovis 3052619 Viruses Viruses 93.5 1.46e-14   NTclustered gi|1169640532|emb|LT837585.1| 11099 g64665 i0 96.429 0.516605166051661 56 2 21 0 1 56 12222 12167 Bovine viral diarrhea virus 1 genome assembly, complete genome: monopartite blastn 140 93.5 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
7325270 7325270 PRJNA975724_S_NODE_8726_length_463_cov_12.217949_g8545_i0 PRJNA975724 8726 463 12.217949 56.56910387 Carlavirus latensdianthi 3427766 Viruses Viruses 60.2 2.69e-4   NTclustered gi|1995060321|gb|MN450069.1| 12164 g8545 i0 91.304 0.41036717062635 46 1 9 3 1 43 13 58 Carnation latent virus isolate KL, complete genome blastn 190 60.2 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
13699779 13699779 PRJNA975724_S_NODE_4031_length_549_cov_40.115546_g3853_i0 PRJNA975724 4031 549 40.115546 220.23434754 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.015   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g3853 i0 100 0.0528233151183971 29 0 5 0 521 549 34 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
13700484 13700484 PRJNA975724_S_NODE_67371_length_267_cov_0.917526_g67190_i0 PRJNA975724 67371 267 0.917526 2.44979442 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.007   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g67190 i0 100 0.213483146067416 29 0 11 0 239 267 34 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
14973343 14973343 PRJNA975724_S_NODE_1372_length_737_cov_2.978916_g1223_i0 PRJNA975724 1372 737 2.978916 21.95461092 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.021   NTclustered gi|1995060321|gb|MN450069.1| 12164 g1223 i0 100 0.039348710990502 29 0 4 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
16248567 16248567 PRJNA975724_S_NODE_2433_length_629_cov_12.215827_g2262_i0 PRJNA975724 2433 629 12.215827 76.83755183 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.017   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g2262 i0 100 0.0461049284578696 29 0 5 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
16249540 16249540 PRJNA975724_S_NODE_61413_length_276_cov_1.837438_g61232_i0 PRJNA975724 61413 276 1.837438 5.07132888 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.007   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g61232 i0 100 0.206521739130435 29 0 11 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
17523518 17523518 PRJNA975724_S_NODE_16454_length_404_cov_4.833837_g16273_i0 PRJNA975724 16454 404 4.833837 19.52870148 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.011   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g16273 i0 100 0.141089108910891 29 0 7 0 376 404 34 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;