RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA975724", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA975724 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16569310 16569310 PRJNA975724_S_NODE_51853_length_293_cov_4.518182_g51672_i0 PRJNA975724 51853 293 4.518182 13.23827326 Fusobacterium 848 Bacteria Bacteria 143 1.57e-29   NTclustered gi|2706407748|gb|CP077116.1| 76857 g51672 i0 86.26 44.3890784982935 131 18 45 0 94 224 1836095 1835965 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 13006 143 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
29457247 29457247 PRJNA975724_S_NODE_53210_length_291_cov_1.412844_g53029_i0 PRJNA975724 53210 291 1.412844 4.11137604 Fusobacterium necrophorum 859 Bacteria Bacteria 67.8 3.43e-12   NR WP_222702918.1 859 g53029 i0 48.1 0.814432989690722 79 40 80.4 1 249 16 31 109 WP_222702918.1 hypothetical protein [Fusobacterium necrophorum] diamond 237 67.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;