RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA975724", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA975724 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14020666 14020666 PRJNA975724_S_NODE_54171_length_289_cov_1.782407_g53990_i0 PRJNA975724 54171 289 1.782407 5.15115623 root 1 Root_unresolved Root_unresolved 84.7 9.29e-19   NR ABD46602.1 5778 g53990 i0 72.5 3.17647058823529 51 14 52.9 0 2 154 69 119 ABD46602.1 unknown, partial [Vermamoeba vermiformis] diamond 918 85.5 0.990643274853801 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14973716 14973716 PRJNA975724_S_NODE_28772_length_352_cov_1.856631_g28591_i0 PRJNA975724 28772 352 1.856631 6.53534112 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 185 3.14e-42   NTclustered gi|292559443|ref|NC_013986.1| 5778 g28591 i0 78.853 37.7045454545455 279 55 79 3 1 277 27458 27734 Hartmannella vermiformis mitochondrion, complete genome blastn 13272 185 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;