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contig_metadata

20 rows where bioproject = "PRJNA971676" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA971676 · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2542160 2542160 PRJNA971676_P_NODE_3762_length_411_cov_1.822485_g3673_i0 PRJNA971676 3762 411 1.822485 7.49041335 root 1 Root_unresolved Root_unresolved 222 9.199999999999999e-69   NR TMW60420.1 41045 g3673 i0 79.7 8.76642335766423 133 27 97.1 0 400 2 1 133 TMW60420.1 hypothetical protein Poli38472_000462 [Pythium oligandrum] diamond 3603 223 0.995515695067265 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
3495385 3495385 PRJNA971676_P_NODE_2483_length_487_cov_1.857488_g2394_i0 PRJNA971676 2483 487 1.857488 9.04596656 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 255 3.37e-63   NTclustered gi|675207712|ref|XM_008914493.1| 761204 g2394 i0 79.515 96.3326488706365 371 66 75 8 47 412 393 28 Phytophthora parasitica INRA-310 hsp70-like protein partial mRNA blastn 46914 255 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
3818414 3818414 PRJNA971676_P_NODE_19343_length_245_cov_0.895349_g19254_i0 PRJNA971676 19343 245 0.895349 2.19360505 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 124 4.62e-24   NTclustered gi|2795061008|ref|XM_067940276.1| 4785 g19254 i0 80.745 28.1102040816327 161 29 65 2 5 164 360 201 Phytophthora cinnamomi 60S ribosomal protein L23a (IUM83_15460), partial mRNA blastn 6887 124 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
11148198 11148198 PRJNA971676_P_NODE_1649_length_586_cov_1.200780_g1562_i0 PRJNA971676 1649 586 1.20078 7.0365708 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 401 4.989999999999999e-107   NTclustered gi|1219685856|gb|KY965925.1| 1440116 g1562 i0 80.556 80.598976109215 540 89 90 15 16 544 203 737 Lagenidium giganteum f. caninum isolate UF15-01 heat shock protein 90 (hsp90) gene, partial cds blastn 47231 401 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
13698300 13698300 PRJNA971676_P_NODE_19051_length_246_cov_0.890173_g18962_i0 PRJNA971676 19051 246 0.890173 2.18982558 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 226 1.2399999999999997e-54   NTclustered gi|695448559|ref|XM_009536718.1| 67593 g18962 i0 83.74 67.6626016260163 246 32 99 6 1 245 630 868 Phytophthora sojae ATP synthase beta subunit mRNA blastn 16645 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
17522915 17522915 PRJNA971676_P_NODE_9834_length_288_cov_1.074419_g9745_i0 PRJNA971676 9834 288 1.074419 3.09432672 Phytophthora hydrogena 1286608 SAR_Eukaryotes SAR_Eukaryotes 217 8.93e-52   NTclustered gi|1233050041|gb|KX252277.1| 1286608 g9745 i0 85.167 72.6354166666667 209 31 73 0 23 231 222 14 Phytophthora hydrogena isolate 44G8(authentic) heat shock protein 90 gene, partial cds blastn 20919 217 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora hydrogena
27221635 27221635 PRJNA971676_P_NODE_21082_length_243_cov_1.358824_g20993_i0 PRJNA971676 21082 243 1.358824 3.30194232 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 122 2.66e-30   NR KAF1793757.1 29920 g20993 i0 71.3 4.9382716049382704 80 23 98.8 0 2 241 95 174 KAF1793757.1 Alpha-D-phosphohexomutase, conserved site [Phytophthora cactorum] diamond 1200 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
27664277 27664277 PRJNA971676_P_NODE_23584_length_241_cov_0.916667_g23495_i0 PRJNA971676 23584 241 0.916667 2.20916747 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 122 4.82e-30   NR KAL4144394.1 164328 g23495 i0 67.5 12.9460580912863 80 26 99.6 0 241 2 627 706 KAL4144394.1 hypothetical protein PRNP1_013527 [Phytophthora ramorum] diamond 3120 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
27815896 27815896 PRJNA971676_P_NODE_12804_length_260_cov_1.016043_g12715_i0 PRJNA971676 12804 260 1.016043 2.6417118 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 123 7.34e-31   NR KAH9108398.1 100861 g12715 i0 82.6 0.796153846153846 69 12 79.6 0 258 52 412 480 KAH9108398.1 hypothetical protein AeMF1_016428 [Aphanomyces euteiches] diamond 207 123 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
28194388 28194388 PRJNA971676_P_NODE_21586_length_243_cov_0.905882_g21497_i0 PRJNA971676 21586 243 0.905882 2.20129326 Phytophthora nicotianae P1569 1317065 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0367   NR ETI45668.1 1317065 g21497 i0 35.2 0.666666666666667 54 30 60.5 1 90 236 479 532 ETI45668.1 hypothetical protein F443_09813 [Phytophthora nicotianae P1569] diamond 162 42.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
28358591 28358591 PRJNA971676_P_NODE_22286_length_242_cov_0.911243_g22197_i0 PRJNA971676 22286 242 0.911243 2.20520806 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 115 2.07e-29   NR KAJ8578052.1 4785 g22197 i0 66.7 6.44628099173554 75 25 93 0 225 1 117 191 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 1560 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
29558426 29558426 PRJNA971676_P_NODE_23550_length_241_cov_0.916667_g23461_i0 PRJNA971676 23550 241 0.916667 2.20916747 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 52.4 1.49e-5   NR POM57982.1 4796 g23461 i0 38.5 11.3153526970954 78 44 94.6 2 13 240 722 797 POM57982.1 ATP-binding cassette (ABC) Superfamily, partial [Phytophthora palmivora] diamond 2727 52.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
29621223 29621223 PRJNA971676_P_NODE_6090_length_344_cov_1.431734_g6001_i0 PRJNA971676 6090 344 1.431734 4.92516496 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 159 1.66e-47   NR RHY06028.1 112090 g6001 i0 75.5 9.29651162790698 106 25 92.4 1 27 344 18 122 RHY06028.1 hypothetical protein DYB25_001794 [Aphanomyces astaci] diamond 3198 159 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
30000793 30000793 PRJNA971676_P_NODE_10131_length_285_cov_1.452830_g10042_i0 PRJNA971676 10131 285 1.45283 4.1405655 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 119 1.04e-31   NR KAF0727574.1 100861 g10042 i0 56.4 27.0842105263158 101 35 96.8 1 277 2 22 122 KAF0727574.1 hypothetical protein Ae201684_014402 [Aphanomyces euteiches] diamond 7719 120 0.991666666666667 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30506249 30506249 PRJNA971676_P_NODE_9593_length_290_cov_1.419355_g9504_i0 PRJNA971676 9593 290 1.419355 4.1161295 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 57 3.3e-7   NR KAG7399116.1 109152 g9504 i0 51.4 3.32068965517241 72 33 72.4 1 212 3 17 88 KAG7399116.1 Nucleoside diphosphate kinase III, chloroplastic/mitochondrial [Phytophthora boehmeriae] diamond 963 57 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
30917104 30917104 PRJNA971676_P_NODE_18514_length_246_cov_0.890173_g18425_i0 PRJNA971676 18514 246 0.890173 2.18982558 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 62 5.68e-9   NR KAF1334756.1 82926 g18425 i0 50 6.67073170731707 58 29 70.7 0 48 221 75 132 KAF1334756.1 Rpsu-divergently transcribed protein, partial [Globisporangium splendens] diamond 1641 62.4 0.993589743589744 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
31637710 31637710 PRJNA971676_P_NODE_19376_length_245_cov_0.895349_g19287_i0 PRJNA971676 19376 245 0.895349 2.19360505 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 55.5 9.42e-7   NR OQR99310.1 74557 g19287 i0 41.1 1.44489795918367 56 29 68.6 1 238 71 123 174 OQR99310.1 hypothetical protein THRCLA_06565 [Thraustotheca clavata] diamond 354 55.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
31992005 31992005 PRJNA971676_P_NODE_20258_length_244_cov_0.900585_g20169_i0 PRJNA971676 20258 244 0.900585 2.1974274 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00781   NR KAG1692675.1 4784 g20169 i0 38.2 1.45081967213115 68 34 83.6 1 206 3 278 337 KAG1692675.1 hypothetical protein DVH05_025153 [Phytophthora capsici] diamond 354 44.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
32403471 32403471 PRJNA971676_P_NODE_9879_length_287_cov_1.827103_g9790_i0 PRJNA971676 9879 287 1.827103 5.24378561 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 102 3.32e-23   NR DAZ94307.1 4803 g9790 i0 63.6 5.38327526132404 77 28 80.5 0 232 2 92 168 DAZ94307.1 TPA: hypothetical protein N0F65_012076 [Lagenidium giganteum] diamond 1545 102 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
32744420 32744420 PRJNA971676_P_NODE_11480_length_272_cov_1.547739_g11391_i0 PRJNA971676 11480 272 1.547739 4.20985008 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 99.4 1.1099999999999999e-23   NR XP_009840131.1 112090 g11391 i0 48.3 0.981617647058823 89 46 98.2 0 268 2 47 135 XP_009840131.1 hypothetical protein, variant [Aphanomyces astaci] diamond 267 99.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;