RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA971676" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA971676 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4772946 4772946 PRJNA971676_P_NODE_17704_length_247_cov_0.885057_g17615_i0 PRJNA971676 17704 247 0.885057 2.18609079 Hepacivirus hominis 3052230 Viruses Viruses 52.8 0.022   NTclustered gi|338830580|gb|HQ618277.1| 3052230 g17615 i0 100 1.1336032388664 28 0 11 0 7 34 50 23 Hepatitis C virus isolate ET1365 polyprotein gene, partial cds blastn 280 52.8 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Hepacivirus Hepacivirus hominis
11148342 11148342 PRJNA971676_P_NODE_2769_length_467_cov_2.050761_g2680_i0 PRJNA971676 2769 467 2.050761 9.57705387 Locusta migratoria associated flavi-like virus 3142496 Viruses Viruses 342 2.3999999999999998e-89   NTclustered gi|2755703735|tpg|BK067811.1| 3142496 g2680 i0 99.471 0.404710920770878 189 0 40 1 267 454 189 1 TPA_asm: Locusta migratoria associated flavi-like virus isolate MYMM genomic sequence blastn 189 342 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae   Locusta migratoria associated flavi-like virus
28131593 28131593 PRJNA971676_P_NODE_12045_length_267_cov_1.309278_g11956_i0 PRJNA971676 12045 267 1.309278 3.49577226 Foot-and-mouth disease virus O 12118 Viruses Viruses 43.5 0.0203   NR AEE99079.1 12118 g11956 i0 30.4 0.887640449438202 79 53 86.5 1 27 257 123 201 AEE99079.1 VP1, partial [Foot-and-mouth disease virus O] diamond 237 43.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Aphthovirus Aphthovirus vesiculae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;