RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA971676", tax_clade = "PVC group" and tax_phylum = "Candidatus Auribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Auribacterota · 1 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 1 ✖

bioproject 1

  • PRJNA971676 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27594806 27594806 PRJNA971676_P_NODE_14584_length_251_cov_0.865169_g14495_i0 PRJNA971676 14584 251 0.865169 2.17157419 Candidatus Euphemobacter frigidus 3039690 Bacteria Bacteria 74.7 8.3e-14   NR MDP8213908.1 3039690 g14495 i0 47.2 2.46215139442231 72 38 86.1 0 217 2 1 72 MDP8213908.1 SH3 domain-containing protein [Candidatus Euphemobacter frigidus] diamond 618 74.7 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota Candidatus Erginobacteria Candidatus Erginobacterales Candidatus Erginobacteraceae Candidatus Euphemobacter Candidatus Euphemobacter frigidus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;