RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA971676", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA971676 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13698467 13698467 PRJNA971676_P_NODE_6611_length_335_cov_0.881679_g6522_i0 PRJNA971676 6611 335 0.881679 2.95362465 Longimicrobium sp. 2029185 Bacteria Bacteria 58.2 3.83e-7   NR HVH13328.1 2029185 g6522 i0 48.4 2.14029850746269 62 32 55.5 0 308 123 286 347 HVH13328.1 trypsin-like peptidase domain-containing protein [Longimicrobium sp.] diamond 717 58.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29520652 29520652 PRJNA971676_P_NODE_15870_length_249_cov_0.875000_g15781_i0 PRJNA971676 15870 249 0.875 2.17875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 92.8 7.78e-20   NR MEA2064578.1 2026742 g15781 i0 56.8 1.78313253012048 74 32 89.2 0 248 27 275 348 MEA2064578.1 hypothetical protein [Gemmatimonadota bacterium] diamond 444 92.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30727287 30727287 PRJNA971676_P_NODE_20954_length_244_cov_0.900585_g20865_i0 PRJNA971676 20954 244 0.900585 2.1974274 Bacteria 2 Bacteria Bacteria 55.8 1.29e-7   NR NUQ13675.1 2026741 g20865 i0 56.8 1.08196721311475 44 19 54.1 0 134 3 8 51 NUQ13675.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 264 55.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;