RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA971593" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA971593 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11147965 11147965 PRJNA971593_P_NODE_29589_length_232_cov_2.408805_g29440_i0 PRJNA971593 29589 232 2.408805 5.5884276 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 54.7 0.006   NTclustered gi|2621705002|emb|OY762289.1| 2049043 g29440 i0 100 0.125 29 0 13 0 137 165 185379 185351 MAG: Desulfovibrionaceae bacterium isolate 1e2121d5-5174-4668-bae3-9852897706ae genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
16246973 16246973 PRJNA971593_P_NODE_14273_length_318_cov_1.963265_g14124_i0 PRJNA971593 14273 318 1.963265 6.2431827 root 1 Root_unresolved Root_unresolved 161 1.22e-44   NR PLX80625.1 892 g14124 i0 85.7 46 91 13 85.8 0 2 274 177 267 PLX80625.1 MAG: methylcrotonoyl-CoA carboxylase [Desulfuromonas sp.] diamond 14628 162 0.993827160493827 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
27221631 27221631 PRJNA971593_P_NODE_5162_length_534_cov_1.557484_g5015_i0 PRJNA971593 5162 534 1.557484 8.31696456 Pseudomonadati 3379134 Bacteria Bacteria 215 4.6799999999999996e-68   NR WP_306548753.1 895 g5015 i0 63.2 18.938202247191 163 59 91.6 1 20 508 3 164 WP_306548753.1 DJ-1/PfpI family protein [Desulfobulbus sp.] diamond 10113 217 0.990783410138249 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp.
27348508 27348508 PRJNA971593_P_NODE_25263_length_247_cov_0.885057_g25114_i0 PRJNA971593 25263 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 48.5 3.35e-4   NR WP_011189660.1 84980 g25114 i0 37.3 3.40080971659919 67 42 81.4 0 203 3 111 177 WP_011189660.1 serine/threonine-protein kinase [Desulfotalea psychrophila] diamond 840 48.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfotalea Desulfotalea psychrophila
27468494 27468494 PRJNA971593_P_NODE_24603_length_248_cov_0.880000_g24454_i0 PRJNA971593 24603 248 0.88 2.1824 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 146 5.62e-40   NR HJX60212.1 2202153 g24454 i0 91.5 0.991935483870968 82 7 99.2 0 2 247 256 337 HJX60212.1 SLC13 family permease [Thermodesulfobacteriota bacterium] diamond 246 146 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
28794282 28794282 PRJNA971593_P_NODE_12467_length_342_cov_1.144981_g12318_i0 PRJNA971593 12467 342 1.144981 3.91583502 Mailhella massiliensis 1903261 Bacteria Bacteria 121 5.9300000000000005e-33   NR WP_077073607.1 1903261 g12318 i0 58 2.66666666666667 100 42 87.7 0 333 34 25 124 WP_077073607.1 RidA family protein [Mailhella massiliensis] diamond 912 121 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Mailhella Mailhella massiliensis
29362907 29362907 PRJNA971593_P_NODE_6769_length_468_cov_0.974684_g6621_i0 PRJNA971593 6769 468 0.974684 4.56152112 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 45.4 0.0244   NR GJM17643.1 2202153 g6621 i0 30.8 0.5 78 53 49.4 1 375 145 135 212 GJM17643.1 MAG: hypothetical protein DHS20C13_29700 [Thermodesulfobacteriota bacterium] diamond 234 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29488934 29488934 PRJNA971593_P_NODE_21330_length_255_cov_1.269231_g21181_i0 PRJNA971593 21330 255 1.269231 3.23653905 Desulfomonile tiedjei 2358 Bacteria Bacteria 124 1.5799999999999999e-32   NR MBI5252656.1 2358 g21181 i0 67.1 1 85 28 100 0 255 1 64 148 MBI5252656.1 3-hydroxybutyryl-CoA dehydrogenase [Desulfomonile tiedjei] diamond 255 124 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae Desulfomonile Desulfomonile tiedjei
31738771 31738771 PRJNA971593_P_NODE_14937_length_310_cov_2.898734_g14788_i0 PRJNA971593 14937 310 2.898734 8.9860754 Pseudomonadati 3379134 Bacteria Bacteria 43.5 0.0428   NR WP_124330217.1 45657 g14788 i0 56.7 0.648387096774194 30 13 29 0 299 210 580 609 WP_124330217.1 TMEM43 family protein [Desulfonema ishimotonii] diamond 201 43.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema ishimotonii
32207293 32207293 PRJNA971593_P_NODE_578_length_1388_cov_2.949810_g506_i0 PRJNA971593 578 1388 2.94981 40.9433628 Geomesophilobacter sediminis 2798584 Bacteria Bacteria 48.5 0.00982   NR WP_199385748.1 2798584 g506 i0 36.7 0.170749279538905 79 49 16.9 1 214 447 23 101 WP_199385748.1 hypothetical protein [Geomesophilobacter sediminis] diamond 237 48.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomesophilobacter Geomesophilobacter sediminis
32245512 32245512 PRJNA971593_P_NODE_28698_length_242_cov_0.911243_g28549_i0 PRJNA971593 28698 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 104 5.67e-24   NR WP_148895307.1 213224 g28549 i0 77.8 12.7438016528926 63 14 78.1 0 12 200 67 129 WP_148895307.1 aldehyde dehydrogenase family protein [Geothermobacter ehrlichii] diamond 3084 105 0.990476190476191 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geothermobacteraceae Geothermobacter Geothermobacter ehrlichii
32807230 32807230 PRJNA971593_P_NODE_9860_length_386_cov_1.693291_g9711_i0 PRJNA971593 9860 386 1.693291 6.53610326 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 140 5.52e-36   NR HAO22905.1 2049433 g9711 i0 46.5 1.00259067357513 129 68 99.5 1 384 1 302 430 HAO22905.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 387 140 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;