RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA971593", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA971593 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8597327 8597327 PRJNA971593_P_NODE_3647_length_633_cov_3.050000_g3503_i0 PRJNA971593 3647 633 3.05 19.3065 Simkania sp. 34094 Bacteria Bacteria 301 1.04e-99   NR MCB1075931.1 34094 g3503 i0 72.5 0.981042654028436 207 57 98.1 0 633 13 102 308 MCB1075931.1 hypothetical protein [Simkania sp.] diamond 621 301 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
27790509 27790509 PRJNA971593_P_NODE_13444_length_328_cov_1.690196_g13295_i0 PRJNA971593 13444 328 1.690196 5.54384288 Bacteria 2 Bacteria Bacteria 46.2 0.00611   NR WP_194847603.1 1651774 g13295 i0 30.6 2.6890243902439 98 63 86.9 2 326 42 845 940 WP_194847603.1 hypothetical protein [Candidatus Neptunochlamydia vexilliferae] diamond 882 46.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia vexilliferae
28194371 28194371 PRJNA971593_P_NODE_3946_length_609_cov_1.345149_g3802_i0 PRJNA971593 3946 609 1.345149 8.19195741 Candidatus Neptunichlamydia vexilliferae 1651774 Bacteria Bacteria 82.4 2.46e-14   NR MBF5058900.1 1651774 g3802 i0 40.8 0.61576354679803 125 63 56.7 4 401 57 81 204 MBF5058900.1 hypothetical protein [Candidatus Neptunochlamydia vexilliferae] diamond 375 82.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia vexilliferae
30317120 30317120 PRJNA971593_P_NODE_9872_length_386_cov_1.389776_g9723_i0 PRJNA971593 9872 386 1.389776 5.36453536 PVC group 1783257 Bacteria Bacteria 94.4 2.85e-20   NR WP_098038084.1 483423 g9723 i0 37 12.8626943005181 127 75 98.7 1 6 386 31 152 WP_098038084.1 SDR family NAD(P)-dependent oxidoreductase [Estrella lausannensis] diamond 4965 94.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Estrella Estrella lausannensis
30847461 30847461 PRJNA971593_P_NODE_5894_length_501_cov_1.200935_g5746_i0 PRJNA971593 5894 501 1.200935 6.01668435 Waddliaceae bacterium 2026802 Bacteria Bacteria 165 1.29e-46   NR MEX1013391.1 2026802 g5746 i0 46.2 6.10778443113772 171 86 99.4 2 500 3 51 220 MEX1013391.1 NAD(P)-dependent alcohol dehydrogenase [Waddliaceae bacterium] diamond 3060 165 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
32270698 32270698 PRJNA971593_P_NODE_938_length_1144_cov_1.871148_g847_i0 PRJNA971593 938 1144 1.871148 21.40593312 Chlamydiia bacterium 2052156 Bacteria Bacteria 139 8.38e-32   NR MCB1106729.1 2052156 g847 i0 32.7 0.778846153846154 297 180 74.7 8 1134 280 151 439 MCB1106729.1 50S ribosome-binding GTPase [Chlamydiia bacterium] diamond 891 139 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;