RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA971593", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA971593 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27847119 27847119 PRJNA971593_P_NODE_29104_length_241_cov_0.916667_g28955_i0 PRJNA971593 29104 241 0.916667 2.20916747 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 49.3 1.45e-4   NR HOW59223.1 2035772 g28955 i0 50 1.21991701244813 42 21 52.3 0 185 60 212 253 HOW59223.1 GIDE domain-containing protein [Candidatus Omnitrophota bacterium] diamond 294 49.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29709763 29709763 PRJNA971593_P_NODE_4330_length_580_cov_3.820513_g4185_i0 PRJNA971593 4330 580 3.820513 22.1589754 Omnitrophica WOR_2 bacterium GWF2_38_59 1801846 Bacteria Bacteria 171 7.54e-50   NR OGX24287.1 1801846 g4185 i0 42.1 0.982758620689655 190 108 97.8 2 573 7 30 218 OGX24287.1 MAG: hypothetical protein A2Y03_05845 [Omnitrophica WOR_2 bacterium GWF2_38_59] diamond 570 171 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium GWF2_38_59
31795747 31795747 PRJNA971593_P_NODE_3417_length_653_cov_1.568966_g3273_i0 PRJNA971593 3417 653 1.568966 10.24534798 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 54.3 1.53e-4   NR MBF0504326.1 2035772 g3273 i0 31.2 0.70750382848392 154 76 59.3 5 501 115 873 1021 MBF0504326.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 462 54.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;