RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA971593", tax_clade = "Opisthokonta" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA971593 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28257546 28257546 PRJNA971593_P_NODE_11606_length_355_cov_0.946809_g11457_i0 PRJNA971593 11606 355 0.946809 3.36117195 Edhazardia aedis USNM 41457 1003232 Fungi Fungi 150 2.35e-39   NR EJW01433.1 1003232 g11457 i0 61.9 0.997183098591549 118 45 99.7 0 355 2 791 908 EJW01433.1 HAD ATPase, P-type, family IC [Edhazardia aedis USNM 41457] diamond 354 150 1 Eukaryota Opisthokonta Fungi Microsporidia     Culicosporidae Edhazardia Edhazardia aedis
28573403 28573403 PRJNA971593_P_NODE_24287_length_248_cov_0.880000_g24138_i0 PRJNA971593 24287 248 0.88 2.1824 Mitosporidium daphniae 1485682 Fungi Fungi 49.7 1.39e-4   NR XP_013239538.1 1485682 g24138 i0 41 1.00403225806452 83 36 98 3 6 248 244 315 XP_013239538.1 L-serine dehydratase 1 [Mitosporidium daphniae] diamond 249 49.7 1 Eukaryota Opisthokonta Fungi Microsporidia       Mitosporidium Mitosporidium daphniae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;