RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA971593" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 9 ✖

bioproject 1

  • PRJNA971593 · 9 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14972337 14972337 PRJNA971593_P_NODE_4572_length_566_cov_2.336714_g4426_i0 PRJNA971593 4572 566 2.336714 13.22580124 Thecamonas trahens 529818 Root_unresolved Root_unresolved 405 3.72e-108   NTclustered gi|923124493|ref|XM_013900261.1| 461836 g4426 i0 90.554 177.743816254417 307 27 54 2 2 307 151 456 Thecamonas trahens ATCC 50062 ubiquitin C (AMSG_07946), partial mRNA blastn 100603 405 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16247117 16247117 PRJNA971593_P_NODE_23413_length_249_cov_1.312500_g23264_i0 PRJNA971593 23413 249 1.3125 3.268125 Thecamonas trahens 529818 Root_unresolved Root_unresolved 134 7.82e-27   NTclustered gi|923128656|ref|XM_013902341.1| 461836 g23264 i0 76.587 1.36144578313253 252 53 100 6 1 249 373 621 Thecamonas trahens ATCC 50062 actin-like protein 2 (AMSG_05368), mRNA blastn 339 134 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
20070960 20070960 PRJNA971593_P_NODE_2436_length_762_cov_6.223512_g2302_i0 PRJNA971593 2436 762 6.223512 47.42316144 Thecamonas trahens 529818 Root_unresolved Root_unresolved 158 1.57e-33   NTclustered gi|923132316|ref|XM_013904170.1| 461836 g2302 i0 84.375 1.66404199475066 160 25 21 0 559 718 190 31 Thecamonas trahens ATCC 50062 50S ribosomal protein L37a (AMSG_03714), partial mRNA blastn 1268 158 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
26931048 26931048 PRJNA971593_P_NODE_1802_length_872_cov_2.833542_g1681_i0 PRJNA971593 1802 872 2.833542 24.70848624 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 258 5.47e-81   NR XP_013753886.1 461836 g1681 i0 47.3 1.0045871559633 292 140 97 8 27 872 5 292 XP_013753886.1 cysteine proteinase 1 [Thecamonas trahens ATCC 50062] diamond 876 258 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27405395 27405395 PRJNA971593_P_NODE_23243_length_250_cov_0.870056_g23094_i0 PRJNA971593 23243 250 0.870056 2.17514 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 103 2.2699999999999994e-23   NR XP_013758219.1 461836 g23094 i0 69.2 0.936 78 23 92.4 1 231 1 1759 1836 XP_013758219.1 uncharacterized protein AMSG_11840 [Thecamonas trahens ATCC 50062] diamond 234 103 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27910086 27910086 PRJNA971593_P_NODE_10585_length_372_cov_1.043478_g10436_i0 PRJNA971593 10585 372 1.043478 3.88173816 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 43.5 0.0134   NR XP_013757921.1 461836 g10436 i0 38.9 0.435483870967742 54 33 43.5 0 372 211 32 85 XP_013757921.1 uncharacterized protein AMSG_11880 [Thecamonas trahens ATCC 50062] diamond 162 43.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29931376 29931376 PRJNA971593_P_NODE_3511_length_645_cov_1.211538_g3367_i0 PRJNA971593 3511 645 1.211538 7.8144201 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 163 4.4799999999999984e-43   NR XP_013759408.1 461836 g3367 i0 38.8 0.995348837209302 214 128 99.5 2 3 644 144 354 XP_013759408.1 stress protein [Thecamonas trahens ATCC 50062] diamond 642 163 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31359562 31359562 PRJNA971593_P_NODE_22576_length_250_cov_2.067797_g22427_i0 PRJNA971593 22576 250 2.067797 5.1694925 root 1 Root_unresolved Root_unresolved 89 2.23e-18   NR XP_013762274.1 461836 g22427 i0 55.6 4.932 81 35 97.2 1 249 7 522 601 XP_013762274.1 uncharacterized protein AMSG_01102 [Thecamonas trahens ATCC 50062] diamond 1233 89 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31922468 31922468 PRJNA971593_P_NODE_25837_length_246_cov_0.890173_g25688_i0 PRJNA971593 25837 246 0.890173 2.18982558 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 74.3 2.85e-13   NR XP_013758095.1 461836 g25688 i0 57.7 2.13414634146341 52 18 63.4 1 242 87 478 525 XP_013758095.1 IBR domain-containing protein [Thecamonas trahens ATCC 50062] diamond 525 74.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;