RNAquarium Metadata Server
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contig_metadata

23 rows where bioproject = "PRJNA966993" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 23 ✖

tax_clade 1

bioproject 1

  • PRJNA966993 · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4770904 4770904 PRJNA966993_P_NODE_89444_length_247_cov_0.885057_g88992_i0 PRJNA966993 89444 247 0.885057 2.18609079 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.022   NTclustered gi|2319599143|ref|XM_001319534.2| 412133 g88992 i0 100 0.11336032388664 28 0 11 0 133 160 2416 2389 Trichomonas vaginalis G3 A-type inclusion protein-like (TVAGG3_0609930), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
6045359 6045359 PRJNA966993_P_NODE_39885_length_341_cov_0.932836_g39433_i0 PRJNA966993 39885 341 0.932836 3.18097076 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 261 4.92e-65   NTclustered gi|2806470097|ref|XM_068493638.1| 1144522 g39433 i0 83.513 41.9530791788856 279 46 82 0 1 279 285 7 Tritrichomonas foetus Tubulin beta chain (TRFO_07368), partial mRNA blastn 14306 261 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
17520087 17520087 PRJNA966993_P_NODE_30714_length_383_cov_1.809677_g30262_i0 PRJNA966993 30714 383 1.809677 6.93106291 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.01   NTclustered gi|123356797|ref|XM_001295652.1| 412133 g30262 i0 96.875 0.0835509138381201 32 1 8 0 210 241 162 131 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0616710), partial mRNA blastn 32 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
20069159 20069159 PRJNA966993_P_NODE_7816_length_748_cov_4.514074_g7423_i0 PRJNA966993 7816 748 4.514074 33.76527352 root 1 Root_unresolved Root_unresolved 233 3.4e-74   NR XP_001322019.1 412133 g7423 i0 66.9 5.25401069518717 169 54 67 1 743 243 2 170 XP_001322019.1 peptidyl-prolyl cis-trans isomerase protein [Trichomonas vaginalis G3] diamond 3930 234 0.995726495726496 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
25168700 25168700 PRJNA966993_P_NODE_85140_length_249_cov_2.528409_g84688_i0 PRJNA966993 85140 249 2.528409 6.29573841 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 69.4 2.24e-7   NTclustered gi|2806468325|ref|XM_068507147.1| 1144522 g84688 i0 82.278 0.469879518072289 79 14 32 0 167 245 122 44 Tritrichomonas foetus uncharacterized protein (TRFO_30081), partial mRNA blastn 117 69.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26905709 26905709 PRJNA966993_P_NODE_85421_length_249_cov_1.681818_g84969_i0 PRJNA966993 85421 249 1.681818 4.18772682 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 91.3 3.3e-19   NR XP_067777918.1 135588 g84969 i0 56.3 5.78313253012048 80 34 96.4 1 247 8 595 673 XP_067777918.1 Sec23/Sec24 trunk domain containing protein [Histomonas meleagridis] diamond 1440 91.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27151901 27151901 PRJNA966993_P_NODE_78982_length_256_cov_1.355191_g78530_i0 PRJNA966993 78982 256 1.355191 3.46928896 Tritrichomonas musculus 1915356 Parabasalia other_Eukaryota 44.7 0.00964   NR KAK8835482.1 1915356 g78530 i0 31.7 0.73828125 63 43 73.8 0 64 252 893 955 KAK8835482.1 hypothetical protein M9Y10_046125 [Tritrichomonas musculus] diamond 189 44.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
27380105 27380105 PRJNA966993_P_NODE_88783_length_247_cov_1.678161_g88331_i0 PRJNA966993 88783 247 1.678161 4.14505767 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 70.9 4.95e-12   NR XP_001309786.1 412133 g88331 i0 49.3 1.61538461538462 73 37 88.7 0 20 238 15 87 XP_001309786.1 cilia- and flagella-associated protein 58-related family [Trichomonas vaginalis G3] diamond 399 71.6 0.990223463687151 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27436969 27436969 PRJNA966993_P_NODE_49163_length_309_cov_2.572034_g48711_i0 PRJNA966993 49163 309 2.572034 7.94758506 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 76.3 1.11e-13   NR XP_068354209.1 1144522 g48711 i0 40.2 2.7378640776699 92 53 89.3 2 279 4 71 160 XP_068354209.1 CAMK family protein kinase [Tritrichomonas foetus] diamond 846 76.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28699829 28699829 PRJNA966993_P_NODE_30467_length_385_cov_0.987179_g30015_i0 PRJNA966993 30467 385 0.987179 3.80063915 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 60.5 1.04e-7   NR XP_001297753.1 412133 g30015 i0 32.2 1.2 90 61 70.1 0 314 45 357 446 XP_001297753.1 tRNA cytidylyltransferase protein [Trichomonas vaginalis G3] diamond 462 60.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28769074 28769074 PRJNA966993_P_NODE_57667_length_288_cov_1.432558_g57215_i0 PRJNA966993 57667 288 1.432558 4.12576704 Trichomonadida 37104 Parabasalia other_Eukaryota 62.4 2.07e-9   NR XP_001318572.1 412133 g57215 i0 40 5.97916666666667 95 46 97.9 2 282 1 19 103 XP_001318572.1 RNA polymerase II transcription regulator recruiting protein [Trichomonas vaginalis G3] diamond 1722 62.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28857425 28857425 PRJNA966993_P_NODE_64288_length_278_cov_2.239024_g63836_i0 PRJNA966993 64288 278 2.239024 6.22448672 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 46.6 0.00243   NR XP_001326995.1 412133 g63836 i0 30.4 0.992805755395683 92 52 92.8 3 20 277 307 392 XP_001326995.1 negative regulation of response to water deprivation [Trichomonas vaginalis G3] diamond 276 46.6 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29047117 29047117 PRJNA966993_P_NODE_59988_length_285_cov_1.169811_g59536_i0 PRJNA966993 59988 285 1.169811 3.33396135 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 50.1 1.68e-4   NR XP_068357501.1 1144522 g59536 i0 30.1 2.43157894736842 73 50 75.8 1 277 62 1712 1784 XP_068357501.1 uncharacterized protein TRFO_28125 [Tritrichomonas foetus] diamond 693 50.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29773086 29773086 PRJNA966993_P_NODE_96931_length_242_cov_1.366864_g96479_i0 PRJNA966993 96931 242 1.366864 3.30781088 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 65.1 1.43e-10   NR KAH0789174.1 135588 g96479 i0 41.3 2.83884297520661 75 44 93 0 13 237 4 78 KAH0789174.1 serine/threonine-protein kinase Nek4 [Histomonas meleagridis] diamond 687 65.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30183828 30183828 PRJNA966993_P_NODE_14272_length_555_cov_9.809129_g13838_i0 PRJNA966993 14272 555 9.809129 54.44066595 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 198 2.59e-61   NR XP_068360038.1 1144522 g13838 i0 57.2 7.45945945945946 173 74 93.5 0 17 535 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 4140 198 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30411719 30411719 PRJNA966993_P_NODE_80693_length_253_cov_1.683333_g80241_i0 PRJNA966993 80693 253 1.683333 4.25883249 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.2 7.82e-7   NR XP_067771063.1 135588 g80241 i0 37.3 5.75098814229249 83 47 98.4 4 4 252 1630 1707 XP_067771063.1 C2 domain containing protein [Histomonas meleagridis] diamond 1455 56.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30569065 30569065 PRJNA966993_P_NODE_84133_length_250_cov_0.870056_g83681_i0 PRJNA966993 84133 250 0.870056 2.17514 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47 0.00132   NR XP_001581432.1 412133 g83681 i0 44 3.864 50 28 60 0 240 91 309 358 XP_001581432.1 GTPase activator protein [Trichomonas vaginalis G3] diamond 966 47.4 0.991561181434599 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30657784 30657784 PRJNA966993_P_NODE_69053_length_271_cov_2.939394_g68601_i0 PRJNA966993 69053 271 2.939394 7.96575774 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 56.6 6.12e-7   NR XP_001582778.1 412133 g68601 i0 45 0.664206642066421 60 33 66.4 0 188 9 224 283 XP_001582778.1 histone-lysine N-methyltransferase family [Trichomonas vaginalis G3] diamond 180 56.6 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31005396 31005396 PRJNA966993_P_NODE_96894_length_242_cov_1.396450_g96442_i0 PRJNA966993 96894 242 1.39645 3.379409 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 45.8 0.00303   NR XP_068346080.1 1144522 g96442 i0 41.3 1.53719008264463 63 31 74.4 2 6 185 253 312 XP_068346080.1 TKL family protein kinase [Tritrichomonas foetus] diamond 372 45.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31574606 31574606 PRJNA966993_P_NODE_1216_length_1685_cov_4.885856_g1079_i0 PRJNA966993 1216 1685 4.885856 82.3266736 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 132 2.4799999999999998e-28   NR EAY10953.1 412133 g1079 i0 26.1 1.97982195845697 571 317 88.7 18 181 1674 714 1252 EAY10953.1 C2 domain containing protein, partial [Trichomonas vaginalis G3] diamond 3336 132 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31606102 31606102 PRJNA966993_P_NODE_100456_length_234_cov_4.354037_g100004_i0 PRJNA966993 100456 234 4.354037 10.18844658 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 50.4 6.72e-5   NR XP_068362867.1 1144522 g100004 i0 45.8 0.615384615384615 48 25 61.5 1 144 1 2823 2869 XP_068362867.1 uncharacterized protein TRFO_21244 [Tritrichomonas foetus] diamond 144 50.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32270626 32270626 PRJNA966993_P_NODE_45678_length_320_cov_0.834008_g45226_i0 PRJNA966993 45678 320 0.834008 2.6688256 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 55.8 9.19e-7   NR XP_001323614.1 412133 g45226 i0 53.6 0.975 56 20 52.5 1 228 61 111 160 XP_001323614.1 GTPase protein [Trichomonas vaginalis G3] diamond 312 55.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32397190 32397190 PRJNA966993_P_NODE_92059_length_245_cov_1.587209_g91607_i0 PRJNA966993 92059 245 1.587209 3.88866205 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 44.7 0.00813   NR XP_068349620.1 1144522 g91607 i0 35.4 2.74285714285714 82 44 93.1 4 18 245 407 485 XP_068349620.1 uncharacterized protein TRFO_37341 [Tritrichomonas foetus] diamond 672 44.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;