RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA966993", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA966993 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
942156 942156 PRJNA966993_P_NODE_46901_length_315_cov_4.198347_g46449_i0 PRJNA966993 46901 315 4.198347 13.22479305 Gammaretrovirus murleu 3428959 Viruses Viruses 577 3.9299999999999986e-160   NTclustered gi|86371744|gb|DQ359272.1| 11786 g46449 i0 99.683 56.9904761904762 315 1 100 0 1 315 327 13 Murine leukemia virus retroviral envelope glycoprotein gene, complete cds blastn 17952 577 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
3493224 3493224 PRJNA966993_P_NODE_85163_length_249_cov_2.397727_g84711_i0 PRJNA966993 85163 249 2.397727 5.97034023 Lentivirus simimdef 3418654 Viruses Viruses 52.8 0.023   NTclustered gi|40549079|gb|AY492332.1| 11723 g84711 i0 100 0.112449799196787 28 0 11 0 222 249 150 123 Simian immunodeficiency virus isolate AU91wk16-9 envelope glycoprotein (env) gene, partial cds blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;