RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA964500", tax_phylum = "Peploviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Peploviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA964500 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15293444 15293444 PRJNA964500_S_NODE_2852_length_307_cov_2.809353_g2760_i0 PRJNA964500 2852 307 2.809353 8.62471371 root 1 Root_unresolved Root_unresolved 568 2.3e-157   NTclustered gi|2583941926|gb|OP431890.1| 10298 g2760 i0 100 100 307 0 100 0 1 307 50956 50650 Human alphaherpesvirus 1 strain HSV1-v63_d84_oral, partial genome blastn 30700 568 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1
20391789 20391789 PRJNA964500_S_NODE_1836_length_357_cov_30250.756098_g1744_i0 PRJNA964500 1836 357 30250.756098 107995.19926986 root 1 Root_unresolved Root_unresolved 457 6.1299999999999984e-124   NTclustered gi|2583942922|gb|OP431909.1| 10298 g1744 i0 100 134.294117647059 247 0 69 0 57 303 130534 130780 Human alphaherpesvirus 1 strain HSV1-v62_d3_gen_les, partial genome blastn 47943 457 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;