RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA964500" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA964500 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12744766 12744766 PRJNA964500_S_NODE_9770_length_189_cov_3.637500_g9678_i0 PRJNA964500 9770 189 3.6375 6.874875 Nitratiruptor 269258 Bacteria Bacteria 198 1.97e-46   NTclustered gi|1941651227|dbj|AP023059.1| 2724898 g9678 i0 87.861 194.830687830688 173 16 90 4 20 189 379506 379676 Nitratiruptor sp. YY08-13 DNA, complete genome blastn 36823 198 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitratiruptor Nitratiruptor sp. YY08-13
29299568 29299568 PRJNA964500_S_NODE_3749_length_277_cov_4.262097_g3657_i0 PRJNA964500 3749 277 4.262097 11.80600869 Helicobacter pylori 210 Bacteria Bacteria 55.8 3.29e-8   NR GAA9176259.1 210 g3657 i0 72.2 0.389891696750903 36 10 39 0 122 229 6 41 GAA9176259.1 hypothetical protein Kyoto193A_0410 [Helicobacter pylori] diamond 108 55.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;