RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA964500", tax_kingdom = "Pseudomonadati" and tax_phylum = "Aquificota"

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tax_superkingdom 1

tax_phylum 1

  • Aquificota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA964500 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7319899 7319899 PRJNA964500_S_NODE_1726_length_365_cov_10.217262_g1634_i0 PRJNA964500 1726 365 10.217262 37.2930063 Aquificota bacterium 2202151 Bacteria Bacteria 577 4.619999999999999e-160   NTclustered gi|2049899551|gb|CP076324.1| 2202151 g1634 i0 96.562 22.6876712328767 349 11 97 1 8 355 1261466 1261118 MAG: Aquificota bacterium isolate RBS10-58 chromosome, complete genome blastn 8281 577 1 Bacteria   Pseudomonadati Aquificota         Aquificota bacterium
17842990 17842990 PRJNA964500_S_NODE_3734_length_277_cov_13.350806_g3642_i0 PRJNA964500 3734 277 13.350806 36.98173262 Sulfurihydrogenibium 212790 Bacteria Bacteria 481 2.74e-131   NTclustered gi|225643049|gb|CP001229.1| 204536 g3642 i0 99.251 23.1371841155235 267 1 96 1 1 266 1003461 1003727 Sulfurihydrogenibium azorense Az-Fu1, complete genome blastn 6409 481 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense
25167960 25167960 PRJNA964500_S_NODE_3040_length_299_cov_5.951852_g2948_i0 PRJNA964500 3040 299 5.951852 17.79603748 Aquificota bacterium 2202151 Bacteria Bacteria 499 8.26e-137   NTclustered gi|2049899551|gb|CP076324.1| 2202151 g2948 i0 97.603 23.1839464882943 292 6 99 1 8 298 1261466 1261175 MAG: Aquificota bacterium isolate RBS10-58 chromosome, complete genome blastn 6932 499 1 Bacteria   Pseudomonadati Aquificota         Aquificota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;