RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA964500", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 1 ✖

tax_kingdom 1

  • Pseudomonadati · 1 ✖

bioproject 1

  • PRJNA964500 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6045081 6045081 PRJNA964500_S_NODE_7245_length_213_cov_10.739130_g7153_i0 PRJNA964500 7245 213 10.73913 22.8743469 Abditibacterium utsteinense 1960156 Bacteria Bacteria 364 2.119999999999999e-96   NTclustered gi|2363081699|ref|NR_179096.1| 1960156 g7153 i0 98.086 95.7981220657277 209 4 98 0 1 209 454 662 Abditibacterium utsteinense strain R-68213 16S ribosomal RNA, partial sequence blastn 20405 364 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae Abditibacterium Abditibacterium utsteinense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;