RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA964500", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA964500 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
941806 941806 PRJNA964500_S_NODE_421_length_573_cov_35483.257353_g361_i0 PRJNA964500 421 573 35483.257353 203319.06463269 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 92.4 1.47e-19   NR MBA2244988.1 2026742 g361 i0 55.1 1.46073298429319 89 38 45.5 1 321 61 1 89 MBA2244988.1 sce7726 family protein [Gemmatimonadota bacterium] diamond 837 92.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
8918323 8918323 PRJNA964500_S_NODE_2967_length_301_cov_1361.525735_g2875_i0 PRJNA964500 2967 301 1361.525735 4098.19246235 Gemmatimonas 173479 Bacteria Bacteria 383 8.75e-102   NTclustered gi|470475286|ref|NR_076270.1| 173480 g2875 i0 94.737 364.524916943522 247 12 82 1 4 249 247 1 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 109722 385 0.994805194805195 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
13695528 13695528 PRJNA964500_S_NODE_9371_length_192_cov_4.220859_g9279_i0 PRJNA964500 9371 192 4.220859 8.10404928 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 311 2.47e-80   NTclustered gi|575456455|gb|CP007128.1| 861299 g9279 i0 95.833 153.489583333333 192 8 100 0 1 192 3042873 3042682 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 29470 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
16567957 16567957 PRJNA964500_S_NODE_16993_length_152_cov_2.430894_g16901_i0 PRJNA964500 16993 152 2.430894 3.69495888 Gemmatimonas 173479 Bacteria Bacteria 183 4.22e-42   NTclustered gi|470475286|ref|NR_076270.1| 173480 g16901 i0 88.608 22.5263157894737 158 8 100 9 1 152 1659 1812 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 3424 183 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
21343954 21343954 PRJNA964500_S_NODE_5437_length_239_cov_13.028571_g5345_i0 PRJNA964500 5437 239 13.028571 31.13828469 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 222 1.55e-53   NTclustered gi|575456455|gb|CP007128.1| 861299 g5345 i0 84.12 309.502092050209 233 33 97 4 1 232 3042475 3042704 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 73971 222 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
21343973 21343973 PRJNA964500_S_NODE_7877_length_206_cov_3.762712_g7785_i0 PRJNA964500 7877 206 3.762712 7.75118672 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 344 2.6499999999999998e-90   NTclustered gi|2874253789|emb|OY969773.1| 412054 g7785 i0 100 158.616504854369 186 0 90 0 1 186 421811 421996 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 32675 344 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;