RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA964500", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA964500 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6045093 6045093 PRJNA964500_S_NODE_905_length_457_cov_12.439252_g817_i0 PRJNA964500 905 457 12.439252 56.84738164 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 627 5.789999999999998e-175   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g817 i0 91.416 44.7549234135667 466 26 100 11 1 457 1044 584 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 20453 627 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
13695478 13695478 PRJNA964500_S_NODE_2751_length_310_cov_9.793594_g2659_i0 PRJNA964500 2751 310 9.793594 30.3601414 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 460 4.06e-125   NTclustered gi|659103927|gb|KJ569727.1| 1512276 g2659 i0 94.649 27.1064516129032 299 12 95 3 12 306 1432 1730 Cochliopodium kieliense clone 9611 18S ribosomal RNA gene, partial sequence blastn 8403 460 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
17519862 17519862 PRJNA964500_S_NODE_16534_length_153_cov_16.564516_g16442_i0 PRJNA964500 16534 153 16.564516 25.34370948 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 233 4.17e-57   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g16442 i0 94.156 46.0457516339869 154 7 100 2 1 153 422 574 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 7045 233 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
17519866 17519866 PRJNA964500_S_NODE_1694_length_367_cov_57730.526627_g1602_i0 PRJNA964500 1694 367 57730.526627 211871.03272109 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 377 5.06e-100   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g1602 i0 92.251 244.065395095368 271 14 72 4 57 320 1720 1990 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 89572 377 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
22943236 22943236 PRJNA964500_S_NODE_8138_length_203_cov_14.890805_g8046_i0 PRJNA964500 8138 203 14.890805 30.22833415 Cochliopodium 313557 Discosea other_Eukaryota 246 7.56e-61   NTclustered gi|59876024|gb|AY785057.1| 313998 g8046 i0 97.902 46.8275862068966 143 2 70 1 27 169 452 593 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 9506 246 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel
25167994 25167994 PRJNA964500_S_NODE_640_length_509_cov_19993.822917_g566_i0 PRJNA964500 640 509 19993.822917 101768.55864753 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 669 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g566 i0 96.135 112.194499017682 414 9 80 7 10 417 416 4 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 57107 669 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;