RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA951810" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA951810 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
938198 938198 PRJNA951810_P_NODE_93241_length_296_cov_4.224215_g92897_i0 PRJNA951810 93241 296 4.224215 12.5036764 Chlorobaculum sp. MV4-Y 2976335 Bacteria Bacteria 230 1.1799999999999998e-55   NTclustered gi|2304448134|gb|CP104202.1| 2976335 g92897 i0 82.772 72.7972972972973 267 36 89 7 10 271 1249415 1249154 Chlorobaculum sp. MV4-Y chromosome, complete genome blastn 21548 230 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp. MV4-Y
7315223 7315223 PRJNA951810_P_NODE_32086_length_352_cov_9.297491_g31744_i0 PRJNA951810 32086 352 9.297491 32.72716832 Chlorobaculum limnaeum 274537 Bacteria Bacteria 102 3.26e-17   NTclustered gi|1070918267|gb|CP017305.1| 274537 g31744 i0 80.292 1.05681818181818 137 25 39 2 217 352 2212792 2212657 Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome blastn 372 102 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum limnaeum
16240097 16240097 PRJNA951810_P_NODE_37053_length_322_cov_5.759036_g36710_i0 PRJNA951810 37053 322 5.759036 18.54409592 Pelodictyon phaeoclathratiforme 34090 Bacteria Bacteria 62.1 5.02e-5   NTclustered gi|194307659|gb|CP001110.1| 324925 g36710 i0 95 16.2701863354037 40 1 12 1 168 207 2509938 2509900 Pelodictyon phaeoclathratiforme BU-1 chromosome, complete genome blastn 5239 62.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon phaeoclathratiforme
17516208 17516208 PRJNA951810_P_NODE_83234_length_299_cov_2.964602_g82890_i0 PRJNA951810 83234 299 2.964602 8.86415998 Bacteria 2 Bacteria Bacteria 172 1.01e-49   NR TLU51734.1 1095 g82890 i0 86.9 26.819397993311 99 13 99.3 0 297 1 31 129 TLU51734.1 MAG: divalent metal cation transporter [Chlorobium sp.] diamond 8019 172 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
26677098 26677098 PRJNA951810_P_NODE_109901_length_287_cov_1.677570_g109557_i0 PRJNA951810 109901 287 1.67757 4.8146259 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 60.1 3.75e-8   NR KXB97453.1 1662223 g109557 i0 43.2 0.993031358885017 95 51 97.2 3 285 7 87 180 KXB97453.1 MAG: hypothetical protein AA908_06230 [Chlorobi bacterium NICIL-2] diamond 285 60.1 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
27878657 27878657 PRJNA951810_P_NODE_89085_length_298_cov_2.608889_g88741_i0 PRJNA951810 89085 298 2.608889 7.77448922 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 199 2.09e-59   NR KXB97596.1 1662223 g88741 i0 93.3 1.05704697986577 105 1 99.7 1 1 297 272 376 KXB97596.1 MAG: hypothetical protein AA908_05575 [Chlorobi bacterium NICIL-2] diamond 315 199 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
27973267 27973267 PRJNA951810_P_NODE_136605_length_268_cov_3.743590_g136260_i0 PRJNA951810 136605 268 3.74359 10.0328212 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 155 9.2e-42   NR KXB97076.1 1662223 g136260 i0 96.6 0.985074626865672 88 3 98.5 0 267 4 188 275 KXB97076.1 MAG: hypothetical protein AA908_08490, partial [Chlorobi bacterium NICIL-2] diamond 264 155 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
28636637 28636637 PRJNA951810_P_NODE_68947_length_309_cov_2.411017_g68603_i0 PRJNA951810 68947 309 2.411017 7.45004253 Chlorobium ferrooxidans 84205 Bacteria Bacteria 81.3 2.42e-15   NR WP_006367293.1 84205 g68603 i0 78 2.39805825242718 50 11 48.5 0 308 159 828 877 WP_006367293.1 type I restriction endonuclease subunit R [Chlorobium ferrooxidans] diamond 741 81.3 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium ferrooxidans
30373727 30373727 PRJNA951810_P_NODE_76052_length_299_cov_6.141593_g75708_i0 PRJNA951810 76052 299 6.141593 18.36336307 Chlorobaculum tepidum 1097 Bacteria Bacteria 122 1.03e-29   NR WP_226986841.1 1097 g75708 i0 60.6 0.993311036789298 99 39 99.3 0 2 298 520 618 WP_226986841.1 glycosyltransferase family 87 protein [Chlorobaculum tepidum] diamond 297 122 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum
31669114 31669114 PRJNA951810_P_NODE_179077_length_233_cov_3.675000_g178732_i0 PRJNA951810 179077 233 3.675 8.56275 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 85.1 3.22e-17   NR NTW68872.1 2067991 g178732 i0 52.7 1.90557939914163 74 35 95.3 0 4 225 266 339 NTW68872.1 Tol-Pal system beta propeller repeat protein TolB [Chlorobiaceae bacterium] diamond 444 85.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
31960314 31960314 PRJNA951810_P_NODE_57897_length_310_cov_3.915612_g57554_i0 PRJNA951810 57897 310 3.915612 12.1383972 Pseudomonadati 3379134 Bacteria Bacteria 82.8 3.2e-16   NR MEI7706697.1 1095 g57554 i0 72.9 3.73548387096774 48 13 46.5 0 6 149 63 110 MEI7706697.1 SPFH domain-containing protein [Chlorobium sp.] diamond 1158 83.2 0.995192307692308 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32023701 32023701 PRJNA951810_P_NODE_64838_length_310_cov_2.869198_g64495_i0 PRJNA951810 64838 310 2.869198 8.8945138 Bacteria 2 Bacteria Bacteria 61.2 1.93e-8   NR MDB5034780.1 2268192 g64495 i0 58.7 0.832258064516129 46 19 44.5 0 303 166 75 120 MDB5034780.1 AraC family transcriptional regulator [Chlorobiota bacterium] diamond 258 61.2 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;