RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA951810", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA951810 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11139725 11139725 PRJNA951810_P_NODE_145109_length_262_cov_1.497354_g144764_i0 PRJNA951810 145109 262 1.497354 3.92306748 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 143 1.29e-37   NR CEP00212.1 37360 g144764 i0 74.1 1.94656488549618 85 22 97.3 0 262 8 10 94 CEP00212.1 hypothetical protein PBRA_007946 [Plasmodiophora brassicae] diamond 510 143 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
21337778 21337778 PRJNA951810_P_NODE_121677_length_279_cov_1.791262_g121332_i0 PRJNA951810 121677 279 1.791262 4.99762098 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 124 1.5e-31   NR SPQ93189.1 37360 g121332 i0 65.2 7.91397849462366 92 31 98.9 1 2 277 21 111 SPQ93189.1 unnamed protein product [Plasmodiophora brassicae] diamond 2208 124 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27089005 27089005 PRJNA951810_P_NODE_176082_length_236_cov_5.558282_g175737_i0 PRJNA951810 176082 236 5.558282 13.11754552 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 50.1 8.95e-5   NR SPR02013.1 37360 g175737 i0 53.5 1.09322033898305 43 20 54.7 0 88 216 180 222 SPR02013.1 unnamed protein product [Plasmodiophora brassicae] diamond 258 50.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28415452 28415452 PRJNA951810_P_NODE_176346_length_236_cov_3.576687_g176001_i0 PRJNA951810 176346 236 3.576687 8.44098132 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.14e-6   NR CEP00087.1 37360 g176001 i0 42.1 0.966101694915254 76 41 94.1 2 5 226 555 629 CEP00087.1 hypothetical protein PBRA_007821 [Plasmodiophora brassicae] diamond 228 55.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28762561 28762561 PRJNA951810_P_NODE_26607_length_390_cov_2.558360_g26265_i0 PRJNA951810 26607 390 2.55836 9.977604 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 82.4 8.24e-16   NR CEO95246.1 37360 g26265 i0 33.1 2.09230769230769 136 82 99.2 4 388 2 157 290 CEO95246.1 hypothetical protein PBRA_004012 [Plasmodiophora brassicae] diamond 816 82.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30537700 30537700 PRJNA951810_P_NODE_67613_length_309_cov_10.423729_g67270_i0 PRJNA951810 67613 309 10.423729 32.20932261 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.97e-14   NR YP_010227892.1 41456 g67270 i0 51.5 3.67961165048544 97 42 89.3 1 33 308 68 164 YP_010227892.1 NADH dehydrogenase subunit 4 [Polymyxa betae] diamond 1137 79 0.994936708860759 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
31416118 31416118 PRJNA951810_P_NODE_184176_length_227_cov_3.058442_g183831_i0 PRJNA951810 184176 227 3.058442 6.94266334 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0022   NR MES1922135.1 126728 g183831 i0 51.1 0.621145374449339 47 18 62.1 1 1 141 26 67 MES1922135.1 hypothetical protein [Bonamia ostreae] diamond 141 43.5 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
32618034 32618034 PRJNA951810_P_NODE_177760_length_234_cov_7.204969_g177415_i0 PRJNA951810 177760 234 7.204969 16.85962746 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 59.7 3.49e-8   NR AVG22652.1 37360 g177415 i0 45 0.769230769230769 60 31 74.4 1 53 226 904 963 AVG22652.1 MAPKKK5 [Plasmodiophora brassicae] diamond 180 59.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;