RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA951810" and tax_clade = "SAR202 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 3 ✖

bioproject 1

  • PRJNA951810 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4765349 4765349 PRJNA951810_P_NODE_22624_length_422_cov_3.464183_g22286_i0 PRJNA951810 22624 422 3.464183 14.61885226 SAR202 cluster bacterium 2030829 Bacteria Bacteria 65.9 2.06e-9   NR MQF86826.1 2030829 g22286 i0 60.4 1.0521327014218 53 18 35.5 2 421 272 413 465 MQF86826.1 amidophosphoribosyltransferase [SAR202 cluster bacterium] diamond 444 65.9 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
27183608 27183608 PRJNA951810_P_NODE_36222_length_327_cov_4.562992_g35879_i0 PRJNA951810 36222 327 4.562992 14.92098384 SAR202 cluster bacterium 2030829 Bacteria Bacteria 70.9 1.37e-11   NR MQF98490.1 2030829 g35879 i0 57.1 0.513761467889908 56 24 51.4 0 13 180 678 733 MQF98490.1 recombinase [SAR202 cluster bacterium] diamond 168 70.9 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
29994274 29994274 PRJNA951810_P_NODE_22951_length_419_cov_3.546243_g22613_i0 PRJNA951810 22951 419 3.546243 14.85875817 SAR202 cluster bacterium 2030829 Bacteria Bacteria 46.6 0.0113   NR MBM3933541.1 2030829 g22613 i0 35 0.429594272076372 60 37 43 2 132 311 102 159 MBM3933541.1 DNRLRE domain-containing protein [SAR202 cluster bacterium] diamond 180 46.6 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;