RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA951810", tax_clade = "Candidatus Porisulfidus" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • Candidatus Porisulfidus · 1 ✖

bioproject 1

  • PRJNA951810 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23889629 23889629 PRJNA951810_P_NODE_32479_length_350_cov_3.823105_g32137_i0 PRJNA951810 32479 350 3.823105 13.3808675 uncultured candidatus Porisulfidus sp. 3039487 Bacteria Bacteria 331 3.79e-86   NTclustered gi|2621706121|emb|OY764335.1| 3039487 g32137 i0 83.714 71.8657142857143 350 57 100 0 1 350 488425 488076 MAG: uncultured candidatus Porisulfidus sp. isolate 93d2c08f-77fa-417a-97c6-1065e5bfdc34 genome assembly, chromosome: 1 blastn 25153 331 1 Bacteria Candidatus Porisulfidus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales     uncultured candidatus Porisulfidus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;