RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA951412" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951412 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
934865 934865 PRJNA951412_P_NODE_6221_length_246_cov_0.901734_g6136_i0 PRJNA951412 6221 246 0.901734 2.21826564 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 339 1.5199999999999998e-88   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g6136 i0 91.463 2.01219512195122 246 21 100 0 1 246 306872 306627 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 495 339 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
12413930 12413930 PRJNA951412_P_NODE_6950_length_244_cov_0.912281_g6865_i0 PRJNA951412 6950 244 0.912281 2.22596564 Desulfohalobiaceae bacterium 2683721 Bacteria Bacteria 90.1 7.91e-19   NR MCF8086249.1 2683721 g6865 i0 100 0.540983606557377 44 0 54.1 0 132 1 1 44 MCF8086249.1 RNA polymerase sigma factor RpoD [Desulfohalobiaceae bacterium] diamond 132 90.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae   Desulfohalobiaceae bacterium
20061496 20061496 PRJNA951412_P_NODE_6856_length_245_cov_0.895349_g6771_i0 PRJNA951412 6856 245 0.895349 2.19360505 Desulfohalobiaceae bacterium 2683721 Bacteria Bacteria 118 1.33e-30   NR MEF8822903.1 2683721 g6771 i0 100 0.710204081632653 58 0 71 0 243 70 93 150 MEF8822903.1 electron transfer flavoprotein subunit beta/FixA family protein [Desulfohalobiaceae bacterium] diamond 174 118 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae   Desulfohalobiaceae bacterium
27626042 27626042 PRJNA951412_P_NODE_4404_length_252_cov_0.865922_g4319_i0 PRJNA951412 4404 252 0.865922 2.18212344 Desulfovermiculus sp. 2821143 Bacteria Bacteria 152 1.13e-42   NR MFO7877381.1 2821143 g4319 i0 89.7 1.85714285714286 78 8 92.9 0 17 250 288 365 MFO7877381.1 group II intron reverse transcriptase/maturase [Desulfovermiculus sp.] diamond 468 152 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae Desulfovermiculus Desulfovermiculus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;