RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA951412", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951412 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23887194 23887194 PRJNA951412_P_NODE_6499_length_246_cov_0.884393_g6414_i0 PRJNA951412 6499 246 0.884393 2.17560678 Labilithrix luteola 1391654 Bacteria Bacteria 58.4 4.78e-4   NTclustered gi|913610804|gb|CP012333.1| 1391654 g6414 i0 100 0.247967479674797 31 0 13 0 139 169 8005050 8005080 Labilithrix luteola strain DSM 27648, complete genome blastn 61 58.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
26962157 26962157 PRJNA951412_P_NODE_982_length_458_cov_1.423377_g897_i0 PRJNA951412 982 458 1.423377 6.51906666 Cystobacter fuscus 43 Bacteria Bacteria 50.8 4.52e-4   NR WP_395839996.1 43 g897 i0 34.9 0.825327510917031 126 46 72.7 6 125 457 196 300 WP_395839996.1 hypothetical protein [Cystobacter fuscus] diamond 378 50.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
27032038 27032038 PRJNA951412_P_NODE_2102_length_322_cov_1.236948_g2017_i0 PRJNA951412 2102 322 1.236948 3.98297256 Myxococcales 29 Bacteria Bacteria 71.2 8.43e-12   NR WP_074959002.1 33 g2017 i0 36.8 2.18012422360248 117 62 97.8 3 317 3 81 197 WP_074959002.1 hypothetical protein [Myxococcus fulvus] diamond 702 71.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
27594431 27594431 PRJNA951412_P_NODE_2384_length_306_cov_1.948498_g2299_i0 PRJNA951412 2384 306 1.948498 5.96240388 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 163 5.79e-46   NR NOY12727.1 2026735 g2299 i0 78.3 0.901960784313726 92 20 90.2 0 305 30 371 462 NOY12727.1 asparagine--tRNA ligase [Deltaproteobacteria bacterium] diamond 276 163 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28169196 28169196 PRJNA951412_P_NODE_7385_length_243_cov_0.917647_g7300_i0 PRJNA951412 7385 243 0.917647 2.22988221 Myxococcia 32015 Bacteria Bacteria 59.7 2.08e-8   NR MCA9679621.1 2026763 g7300 i0 62.5 1.77777777777778 48 18 59.3 0 240 97 182 229 MCA9679621.1 ATP-binding cassette domain-containing protein [Myxococcales bacterium] diamond 432 59.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28636496 28636496 PRJNA951412_P_NODE_1747_length_345_cov_1.147059_g1662_i0 PRJNA951412 1747 345 1.147059 3.95735355 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 90.9 5.58e-20   NR MDP3213255.1 2026735 g1662 i0 47.8 0.8 92 48 80 0 285 10 32 123 MDP3213255.1 class I SAM-dependent methyltransferase [Deltaproteobacteria bacterium] diamond 276 90.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32687360 32687360 PRJNA951412_P_NODE_3140_length_277_cov_1.441176_g3055_i0 PRJNA951412 3140 277 1.441176 3.99205752 Enhygromyxa 215802 Bacteria Bacteria 52.8 1.62e-5   NR WP_106092241.1 215803 g3055 i0 45 2.25270758122744 60 30 61.7 1 201 31 291 350 WP_106092241.1 DUF4215 domain-containing protein [Enhygromyxa salina] diamond 624 53.1 0.994350282485876 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Enhygromyxa Enhygromyxa salina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;