RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA951412", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951412 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
934803 934803 PRJNA951412_P_NODE_2021_length_326_cov_1.687747_g1936_i0 PRJNA951412 2021 326 1.687747 5.50205522 Arcobacter aquimarinus 1315211 Bacteria Bacteria 52.8 0.031   NTclustered gi|1845961186|gb|CP030944.1| 1315211 g1936 i0 100 0.0858895705521472 28 0 9 0 223 250 1741425 1741398 Arcobacter aquimarinus strain W63 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter aquimarinus
934862 934862 PRJNA951412_P_NODE_5881_length_247_cov_0.896552_g5796_i0 PRJNA951412 5881 247 0.896552 2.21448344 Arcobacter iocasae 2906515 Bacteria Bacteria 446 8.759999999999998e-121   NTclustered gi|2809047151|gb|CP090177.1| 2906515 g5796 i0 99.19 3.00404858299595 247 2 100 0 1 247 3018861 3018615 Arcobacter sp. KX21116 chromosome, complete genome blastn 742 446 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter iocasae
29084976 29084976 PRJNA951412_P_NODE_6528_length_246_cov_0.861272_g6443_i0 PRJNA951412 6528 246 0.861272 2.11872912 Aliarcobacter 2321111 Bacteria Bacteria 122 1.03e-32   NR WP_237910191.1 28197 g6443 i0 70.4 2.96341463414634 81 24 98.8 0 2 244 21 101 WP_237910191.1 acyltransferase [Aliarcobacter butzleri] diamond 729 122 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
30973595 30973595 PRJNA951412_P_NODE_8014_length_242_cov_0.905325_g7929_i0 PRJNA951412 8014 242 0.905325 2.1908865 Campylobacterota bacterium 2026809 Bacteria Bacteria 48.1 4.43e-4   NR HHH37351.1 2026809 g7929 i0 38.6 2.23140495867769 70 42 85.5 1 217 11 82 151 HHH37351.1 PDZ domain-containing protein [Campylobacterota bacterium] diamond 540 48.1 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;