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contig_metadata

9 rows where bioproject = "PRJNA951412", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 9 ✖

tax_phylum 1

  • Bdellovibrionota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951412 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6037951 6037951 PRJNA951412_P_NODE_6045_length_247_cov_0.890805_g5960_i0 PRJNA951412 6045 247 0.890805 2.20028835 Micavibrio sp. 2024841 Bacteria Bacteria 159 3.4e-45   NR MAF68915.1 2024841 g5960 i0 91.5 7.96761133603239 82 7 99.6 0 2 247 146 227 MAF68915.1 tyrosine--tRNA ligase [Micavibrio sp.] diamond 1968 159 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
8587797 8587797 PRJNA951412_P_NODE_5707_length_248_cov_0.880000_g5622_i0 PRJNA951412 5707 248 0.88 2.1824 Micavibrio sp. 2024841 Bacteria Bacteria 150 8.029999999999998e-42   NR HEU4838565.1 2024841 g5622 i0 92.4 0.955645161290323 79 5 94.4 1 235 2 1 79 HEU4838565.1 cystathionine gamma-synthase [Micavibrio sp.] diamond 237 150 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
21336927 21336927 PRJNA951412_P_NODE_6797_length_245_cov_0.901163_g6712_i0 PRJNA951412 6797 245 0.901163 2.20784935 Pseudomonadati 3379134 Bacteria Bacteria 149 3.83e-40   NR MFA5582904.1 2081706 g6712 i0 88.8 1.95918367346939 80 9 98 0 3 242 236 315 MFA5582904.1 pyruvate, phosphate dikinase [Bacteriovoracaceae bacterium] diamond 480 149 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
24214407 24214407 PRJNA951412_P_NODE_5699_length_248_cov_0.880000_g5614_i0 PRJNA951412 5699 248 0.88 2.1824 Peredibacter 263370 Bacteria Bacteria 237 5.77e-58   NTclustered gi|2631252187|gb|CP139487.1| 28202 g5614 i0 84.362 1.93145161290323 243 36 97 2 8 248 2329026 2328784 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 479 237 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
27310275 27310275 PRJNA951412_P_NODE_6223_length_246_cov_0.901734_g6138_i0 PRJNA951412 6223 246 0.901734 2.21826564 Bdellovibrio sp. 28201 Bacteria Bacteria 74.3 1.35e-13   NR MFM6926909.1 28201 g6138 i0 42 0.98780487804878 81 47 98.8 0 244 2 18 98 MFM6926909.1 hypothetical protein [Bdellovibrio sp.] diamond 243 74.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
27436672 27436672 PRJNA951412_P_NODE_5023_length_250_cov_0.875706_g4938_i0 PRJNA951412 5023 250 0.875706 2.189265 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 104 1.54e-25   NR MCM2350815.1 2081706 g4938 i0 56.1 1.968 82 36 98.4 0 248 3 10 91 MCM2350815.1 response regulator transcription factor [Bacteriovoracaceae bacterium] diamond 492 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
27689421 27689421 PRJNA951412_P_NODE_7064_length_244_cov_0.912281_g6979_i0 PRJNA951412 7064 244 0.912281 2.22596564 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 129 9.08e-33   NR MBI2234824.1 349221 g6979 i0 82.5 0.983606557377049 80 14 98.4 0 4 243 325 404 MBI2234824.1 PAS domain-containing sensor histidine kinase [Micavibrio aeruginosavorus] diamond 240 129 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
28478418 28478418 PRJNA951412_P_NODE_6406_length_246_cov_0.895954_g6321_i0 PRJNA951412 6406 246 0.895954 2.20404684 Micavibrio sp. 2024841 Bacteria Bacteria 90.5 2.03e-20   NR MFA5592134.1 2024841 g6321 i0 55.6 1.97560975609756 81 36 98.8 0 245 3 95 175 MFA5592134.1 OmpH family outer membrane protein [Micavibrio sp.] diamond 486 90.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
30657469 30657469 PRJNA951412_P_NODE_7413_length_243_cov_0.917647_g7328_i0 PRJNA951412 7413 243 0.917647 2.22988221 Peredibacter starrii 28202 Bacteria Bacteria 124 6.5699999999999985e-34   NR WP_321396324.1 28202 g7328 i0 76.3 1.87654320987654 76 18 93.8 0 242 15 15 90 WP_321396324.1 hypothetical protein [Peredibacter starrii] diamond 456 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;