RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA951412", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 5 ✖

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951412 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
934843 934843 PRJNA951412_P_NODE_4861_length_250_cov_0.881356_g4776_i0 PRJNA951412 4861 250 0.881356 2.20339 Bacteria 2 Bacteria Bacteria 171 2.92e-47   NR MBA3637980.1 1978231 g4776 i0 95.2 5.976 83 4 99.6 0 250 2 735 817 MBA3637980.1 DNA polymerase III subunit alpha [Acidobacteriota bacterium] diamond 1494 171 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
934860 934860 PRJNA951412_P_NODE_5581_length_248_cov_0.891429_g5496_i0 PRJNA951412 5581 248 0.891429 2.21074392 Bacteria 2 Bacteria Bacteria 153 1.6e-42   NR MDI9621051.1 1978231 g5496 i0 87.8 1.98387096774194 82 10 99.2 0 2 247 14 95 MDI9621051.1 TrpB-like pyridoxal phosphate-dependent enzyme [Acidobacteriota bacterium] diamond 492 153 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
3814822 3814822 PRJNA951412_P_NODE_3763_length_259_cov_1.639785_g3678_i0 PRJNA951412 3763 259 1.639785 4.24704315 Bacteria 2 Bacteria Bacteria 431 2.589999999999999e-116   NTclustered gi|31789363|gb|AY281352.1| 171953 g3678 i0 97.244 890.803088803089 254 7 98 0 1 254 1502 1249 Uncultured Acidobacteria bacterium clone 23k22 genomic sequence blastn 230718 435 0.990804597701149 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
31795360 31795360 PRJNA951412_P_NODE_2597_length_296_cov_3.825112_g2512_i0 PRJNA951412 2597 296 3.825112 11.32233152 Acidobacteriota bacterium 1978231 Bacteria Bacteria 112 1.33e-29   NR MDQ7008653.1 1978231 g2512 i0 72.4 0.881756756756757 87 24 88.2 0 263 3 9 95 MDQ7008653.1 NFYB/HAP3 family transcription factor subunit [Acidobacteriota bacterium] diamond 261 112 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31795361 31795361 PRJNA951412_P_NODE_3397_length_269_cov_1.341837_g3312_i0 PRJNA951412 3397 269 1.341837 3.60954153 Acidobacteriota bacterium 1978231 Bacteria Bacteria 115 5.66e-31   NR MDQ7008653.1 1978231 g3312 i0 77.1 0.925650557620818 83 19 92.6 0 2 250 29 111 MDQ7008653.1 NFYB/HAP3 family transcription factor subunit [Acidobacteriota bacterium] diamond 249 115 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;