RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA951412", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA951412 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6366860 6366860 PRJNA951412_P_NODE_825_length_504_cov_2.909513_g740_i0 PRJNA951412 825 504 2.909513 14.66394552 Mollicutes 31969 Bacteria Bacteria 929 0   NTclustered gi|1563681465|emb|LR214949.1| 2100 g740 i0 100 102.815476190476 503 0 99 0 2 504 19735 19233 Mycoplasma hyorhinis strain NCTC10121 genome assembly, plasmid: 3 blastn 51819 929 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
17840234 17840234 PRJNA951412_P_NODE_8314_length_201_cov_4.429688_g8229_i0 PRJNA951412 8314 201 4.429688 8.90367288 Mollicutes 31969 Bacteria Bacteria 370 4.25e-98   NTclustered gi|1958638505|gb|MW498314.1| 2100 g8229 i0 100 99.2039800995025 200 0 99 0 2 201 2867 2668 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 19940 370 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
25489344 25489344 PRJNA951412_P_NODE_8040_length_241_cov_3.660714_g7955_i0 PRJNA951412 8040 241 3.660714 8.82232074 Bacteria 2 Bacteria Bacteria 444 3.06e-120   NTclustered gi|1720621726|gb|CP035041.1| 2100 g7955 i0 100 77.8215767634855 240 0 99 0 1 240 429110 428871 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 18755 444 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;